BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488325 Length=1556 Score E Sequences producing significant alignments: (Bits) Value AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:47769... 2337 0.0 > AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:4776943-4779494 FORWARD LENGTH=1559 Length=1559 Score = 2337 bits (1265), Expect = 0.0 Identities = 1449/1536 (94%), Gaps = 19/1536 (1%) Strand=Plus/Plus Query 1 ATTTCGTCCTATATAAATCCTCTCTTCTCCAATTAGTGAATTTCACACAAAA-ACAAATC 59 |||||||||||||||||||||||| |||||||||| || ||||||||||||| | ||||| Sbjct 1 ATTTCGTCCTATATAAATCCTCTCATCTCCAATTACTG-ATTTCACACAAAACAAAAATC 59 Query 60 GACC-AA-AGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCA 117 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GACCAAAGAGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCG 119 Query 118 CTAAGGCTGCGATCAGAGCATGTTCTTCCTCTTCTTCTACGGGTTACTTCGCTCGACGTC 177 ||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||| Sbjct 120 CTAAGGCAACGATCAGGGCCTGTTCTTCCTCTTCTTCTTCGGGTTACTTCGCTCGACGTC 179 Query 178 AATTTAATGCATCTTCTGCTGATAGCAAAAAGATTGTTGGAGTTTTCTACAAGGCCAACG 237 | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 180 AGTTTAATGCATCTTCTGGTGATAGCAAAAAGATTGTAGGAGTTTTCTACAAGGCCAACG 239 Query 238 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 299 Query 298 ACTGGCTTGAATCACAAGGACATCAGTACATCGTCACTGATGACAAAGAAGGCCCTGACT 357 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 300 ACTGGCTTGAATCCCAAGGACATCAGTACATCGTCACTGATGACAAGGAAGGCCCTGATT 359 Query 358 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCTTTCCACCCGG 417 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 360 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCCTTCCACCCGG 419 Query 418 CATATGTGACTGCTGAAAGAATCAAGAAAGCCAAGAACCTGAAGCTTCTCCTCACGGCTG 477 | ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||| Sbjct 420 CGTATGTAACTGCTGAAAGAATCAAGAAAGCCAAAAACTTGAAGCTTCTCCTCACAGCTG 479 Query 478 GTATTGGTTCAGATCACATTGATCTCCAGGCAGCTGCAGCTGCTGGCTTGACGGTTGCTG 537 ||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 GTATTGGCTCGGATCATATTGATCTCCAGGCAGCTGCAGCTGCTGGCCTGACGGTTGCTG 539 Query 538 AAGTCACGGGAAGCAACGTGGTTTCAGTAGCGGAAGATGAGCTCATGAGAATCCTAATCC 597 |||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||| Sbjct 540 AAGTCACGGGAAGCAACGTGGTCTCAGTGGCAGAAGATGAGCTCATGAGAATCTTAATCC 599 Query 598 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTTGTCAAAGGCGAGTGGAACGTCGCGG 657 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 600 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTCGTCAAAGGCGAGTGGAACGTCGCGG 659 Query 658 GCATTGCATACAGAGCTTATGATCTTGAAGGGAAGACGATCGGAACTGTGGGAGCTGGAA 717 ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 660 GCATTGCGTACAGAGCTTATGATCTTGAAGGGAAGACGATAGGAACCGTGGGAGCTGGAA 719 Query 718 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGCAATTTATTGTACCATG 777 ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 720 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGTAACTTGTTGTACCATG 779 Query 778 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGATTGGTGCTAAGTTTGTTGAGGATC 837 |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct 780 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGACTGGAGCTAAGTTCGTTGAGGATC 839 Query 838 TGAATGAAATGCTCCCTAAATGTGACGTTGTAGTCATCAACATGCCTCTCACGGAGAAGA 897 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 840 TGAATGAAATGCTCCCTAAATGTGACGTTATAGTCATCAACATGCCTCTCACGGAGAAGA 899 Query 898 CAAGAGGAATGTTCAACAAAGAGTTGATAGGAAAATTGAAGAAAGGTGTTTTGATAGTGA 957 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 900 CAAGAGGAATGTTCAACAAAGAGTTGATAGGGAAATTGAAGAAAGGCGTTTTGATAGTGA 959 Query 958 ACAACGCAAGAGGTGCCATCATGGATAGGCAAGCGGTGGTGGAGGCGGTGGAGAGTGGAC 1017 ||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 960 ACAACGCAAGAGGAGCCATCATGGAGAGGCAAGCAGTGGTGGATGCGGTGGAGAGTGGAC 1019 Query 1018 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1079 Query 1078 GGCGTTACATGCCTAACCAAGCCATGACCCCGCATACCTCCGGCACCACCATTGACGCTC 1137 ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 1080 GGCGTTACATGCCTAACCAGGCTATGACCCCTCATACCTCCGGCACCACCATTGACGCTC 1139 Query 1138 AGCTACGATATGCGGCGGGGACGAAAGACATGTTGGAGAGGTACTTTAAGGGAGAAGACT 1197 ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1140 AGCTACGGTATGCGGCGGGGACGAAAGACATGTTGGAGAGATACTTCAAGGGAGAAGACT 1199 Query 1198 TCCCTGCTCAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1257 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TCCCTACTGAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1259 Query 1258 TTGAGGAGGTGAGATTGGGAAGATGATGAGAAACGACCTCAACGTTCAAGAAAACAAATA 1317 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1260 TTGAGGAGGTGACATTGGGAAGATGATGAGAAACGACCCCAACGTTCAAGAAAACAAATA 1319 Query 1318 AAAAAGTATTTCGACTTTGCTAAGTCGAATAACTTG-GTCATCTTTTCGTTTAGTTTTTG 1376 || |||||||| |||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 1320 AAGAAGTATTTGGACTTTGCTAAGTCGAATGACTTGAGTCATCTTTTGGTTTAGTTTTTG 1379 Query 1377 TTATT-TCATAAGCAGAATAAATA-TAGGAGGGCACTTACTTCCCCTGTTCCGAGAGTTT 1434 ||||| | ||||||| ||||| || ||||||||||||| | ||| ||||| |||||||| Sbjct 1380 TTATTAT-ATAAGCACAATAA-TAATAGGAGGGCACTT-C--CCC-TGTTCTGAGAGTTT 1433 Query 1435 GTGAACGTATTCCTTTAGTAGTTTAAATCACATACAGTTTATGTATTTGTTTCCCCAATT 1494 |||||| |||| || ||| |||||||||||| || | ||||||||||||||||||| Sbjct 1434 GTGAACATATTACTC-AGTGGTTTAAATCACA--CA-T--ATGTATTTGTTTCCCCAATC 1487 Query 1495 GTAGGAACTCAATGGTTCCAAATCTCATTATATAAA 1530 ||||||||||||||||| |||||||||||||||||| Sbjct 1488 GTAGGAACTCAATGGTTTCAAATCTCATTATATAAA 1523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76806833850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5