BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488334 Length=1063 Score E Sequences producing significant alignments: (Bits) Value AT5G14920.1 | Symbols: | Gibberellin-regulated family protein ... 1338 0.0 > AT5G14920.1 | Symbols: | Gibberellin-regulated family protein | chr5:4826479-4827980 FORWARD LENGTH=1166 Length=1166 Score = 1338 bits (724), Expect = 0.0 Identities = 977/1089 (90%), Gaps = 58/1089 (5%) Strand=Plus/Plus Query 1 TATTTATGGATAATATGGTAAATAAATAAGGAACTTCTATTTAAAGCACAAAAGG-CAAT 59 ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | | Sbjct 16 TATTTATGGATAATATGGTTAATAAATAAGGAACTTCTATTTATATCACAAAAGGTC-AC 74 Query 60 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCACAAAAAATGGCTCTCTCACT 119 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 75 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCAC-AAAAATGGCTCTCTCACT 133 Query 120 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 193 Query 180 GGAATCCAAGGCATTAGTTTCTTTACCAACGCCAACTCTTCCATCGCCATCTCCGGCTAT 239 ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 194 GGAATCCAACGCCTTAGTTTCTTTACCAACGCCAACACTTCCATCGCCATCTCCGGCTAC 253 Query 240 CAAACCACCGTCGCCGGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 299 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 CAAACCGCCGTCGCCAGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 313 Query 300 AACTACTCCTATTAAACCACCTACCACAACTAC-TCCGGTCAAACCTCCCACCACTCCGG 358 ||||||||||||||||||||| ||||||| || ||||||||||||||| || | ||||| Sbjct 314 AACTACTCCTATTAAACCACCCACCACAAA-ACCTCCGGTCAAACCTCCAACTATTCCGG 372 Query 359 TTACACCAACAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 418 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 TTACACCAGTAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 432 Query 419 CTACGTACAGACCCCCAACGCCAACAATTAAACCACCGTCCGTCCAACCACCTACGTACA 478 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 433 CTACGTACAAACCCCCAACGCCAACAGTTAAACCACCGTCCGTCCAACCACCTACGTACA 492 Query 479 AACCCCCAACGCCACCGGTTAAACCACCCACTACATCACCGATTAAACCACCAACGACGC 538 |||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |||| Sbjct 493 AACCCCCAACTCCAACGGTTAAACCACCCACTACATCACCGGTTAAACCACCCACTACGC 552 Query 539 CACCGGTTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTT 597 |||| ||| || | ||||||||||||||||| |||||||||||||||||| || |||||| Sbjct 553 CACCAGTTCAATCACCGCCGGTCCAACCACCTACGTACAAACCCCCAACGTCA-CCGGTT 611 Query 598 AAACCACCCACCACAACATC-ACCGGTTAAACCACCTACGTACAAACCCCCAACGTCACC 656 ||||||||||||||||| || |||||||||||| || | || || | | || |||| Sbjct 612 AAACCACCCACCACAAC-TCCACCGGTTAAACC-CC--C---CA--CCACGA-CGCCACC 661 Query 657 GGTT-ATACCACCCACGACACCACCAGTTAAACCACCAACTGCACCACCTGTCAAACCTC 715 ||| | |||||| ||| || | | | || |||||| || ||| || ||||| | Sbjct 662 GGTCCA-ACCACCTACGT-AC-A--A-TC---CC-CCAACT--AC-ACCGGTTAAACCAC 708 Query 716 CGACAGTACC---TGTCAAACCTCCGACGACACCACCTCCCGTAAGAACTCGGATAGATT 772 | |||| || |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 709 CTACAGCGCCGCCTGTCAAACCTCC-A--ACACCACCTCCCGTAAGAACTCGGATAGATT 765 Query 773 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 825 Query 833 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCTCCTGGCACGTACGGTAATAAGG 892 ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 826 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCCCCAGGCACCTACGGTAATAAGG 885 Query 893 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGCGGAAAATCCAAATGTCCTT 952 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 886 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGTGGAAAATCCAAATGTCCTT 945 Query 953 GAACCTTTTTATGACGATGGT----AAA-----T---------CAATGGAGTTTTTATAA 994 |||||||| |||||||||||| ||| | ||||||||||||||||| Sbjct 946 GAACCTTTATATGACGATGGTTGTTAAACGAAATAATTTAAATCAATGGAGTTTTTATAA 1005 Query 995 GTTTGTAATGCGTTTATTTTTGTTTTAGTACCCCTTTGAGTTGGATCTTTGTTTACGGAA 1054 ||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| | Sbjct 1006 GTTTGTAATGCGTTTGTTTTTGTTATAGTAATA-TT-GAGTTGGATCTTTGTTTACGGGA 1063 Query 1055 TGTAGAATA 1063 |||||||| Sbjct 1064 CGTAGAATA 1072 Score = 130 bits (70), Expect = 3e-29 Identities = 148/182 (81%), Gaps = 19/182 (10%) Strand=Plus/Plus Query 429 ACCCCCAACGCCAACAATTAAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAA 487 |||| | |||||| || || || ||||| || |||||||||||||||||||||||||||| Sbjct 542 ACCCACTACGCCACCAGTTCAATCACCG-CCGGTCCAACCACCTACGTACAAACCCCCAA 600 Query 488 CGCCACCGGTTAAACCACCCACTACA--TC-ACCGATTAAACCACCAACGACGCCACCGG 544 || ||||||||||||||||||| ||| || |||| ||||||| || | || | || | Sbjct 601 CGTCACCGGTTAAACCACCCACCACAACTCCACCGGTTAAACCCCC--C-AC-C-AC-G- 653 Query 545 TTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTTAAACCA 603 | | || |||||||||||||| |||||||| |||||||| || |||||||||||| Sbjct 654 --A--CG-CCACCGGTCCAACCACCTACGTACAATCCCCCAACTACA-CCGGTTAAACCA 707 Query 604 CC 605 || Sbjct 708 CC 709 Score = 89.8 bits (48), Expect = 5e-17 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 619 CCGGTTAAACCACCTACGTACAAACCCCCAACGTCACCGGTTATACCACCCACGACA-C- 676 ||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| | Sbjct 570 CCGGTCCAACCACCTACGTACAAACCCCCAACGTCACCGGTTAAACCACCCACCACAACT 629 Query 677 C-ACCAGTTAAACC 689 | ||| |||||||| Sbjct 630 CCACCGGTTAAACC 643 Score = 76.8 bits (41), Expect = 4e-13 Identities = 54/60 (90%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 448 AAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAACGCCACCGGTTAAACCACC 506 |||| |||| || || |||||||||||||||||||||||||||||| | ||||||||||| Sbjct 411 AAACTACCG-CCGGTACAACCACCTACGTACAAACCCCCAACGCCAACAGTTAAACCACC 469 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52057965165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5