BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488338
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14940.1 | Symbols: | Major facilitator superfamily protein... 2784 0.0
AT3G01350.1 | Symbols: | Major facilitator superfamily protein... 575 5e-163
AT3G01360.1 | Symbols: | Family of unknown function (DUF716) ... 259 6e-68
> AT5G14940.1 | Symbols: | Major facilitator superfamily protein
| chr5:4831748-4834395 REVERSE LENGTH=1742
Length=1742
Score = 2784 bits (1507), Expect = 0.0
Identities = 1661/1734 (96%), Gaps = 15/1734 (1%)
Strand=Plus/Plus
Query 1 TCT-TCT-TTTCTCTCCCTC---A-ACACGCACAGACACAAACACAAGCTTTAATATACT 54
||| ||| ||| |||||||| | |||| |||| |||||||||||||||||||||||||
Sbjct 16 TCTCTCTCTTTATCTCCCTCAATACACACACACACACACAAACACAAGCTTTAATATACT 75
Query 55 CTC-TTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGCAAATCTTGTGCTCTTCTCA 113
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 76 CTCTTTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGTAAATCTTGTGCTCTTCTCA 135
Query 114 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 195
Query 174 ATCTAACTGATGTGGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTTAACACTTGGA 233
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 196 ATCTAACTGATGTAGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTGAACACTTGGA 255
Query 234 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTCGCCGATTCTTATTGGGACA 293
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 256 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTTGCCGATTCTTATTGGGACA 315
Query 294 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 375
Query 354 TTACGGCATATGCTGGGTCACGTTCCACTACAAAAACCATCTCTCTTTACTTCCTCTACA 413
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 376 TTACGGCATTTGCTGGGTCACGTTCGACTACAAAAACAATCTCTCTTTACTTCCTCTACA 435
Query 414 CTTCACTCTCCCTCGTCGCTCTTGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 473
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 436 CTTCACTTTCCCTCGTCGCTCTAGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 495
Query 474 GTGCTGACCAGCTCGACCATGACCTTGACCAAGGCCATGACCACGAGCCATCCTCAGAGA 533
||||||||||||||||| | ||||||||||| | | ||||||||||||||||||||||||
Sbjct 496 GTGCTGACCAGCTCGACTACGACCTTGACCATGACAATGACCACGAGCCATCCTCAGAGA 555
Query 534 ACAAAGAAGTCAAATCGAACCGCAAGACTAAGTTTTTCCAATGGTGGTACTTTGGTGTCT 593
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 556 ACAAAGAAGTCAAATCGAACCGCAAGACTCAGTTTTTCCAATGGTGGTATTTTGGTGTCT 615
Query 594 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTATATCCAAGACACGTTTGGTTGGG 653
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 616 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTACATCCAAGACACGTTTGGATGGG 675
Query 654 TTATCGGTTTTGCAATCCCAACTGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 713
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 676 TTATCGGTTTTGCAATCCCAACCGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 735
Query 714 GCTGCGGGGTTTATGTCTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAAGATAT 773
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 736 GCTGCGGGGTCTATGTTTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAGGATAT 795
Query 774 TAGAGAGTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTGAACGACCACG 833
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 TAGAGATTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTTAACGACCACG 855
Query 834 ATTTGAATGCCATGGAGCTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 893
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ATTTAAATGCCATGGAACTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 915
Query 894 CTGAAGCTAATACTACTACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 953
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 CTGAAGC---TA--A-TACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 969
Query 954 CCGGTTTCTCAGGGCTTGAAACCGTCAAGCTATTGCTTCGGCTTTTACCTATATGGACGA 1013
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 970 CCGGTTTTTCGGGGCTTGAAACCGTCAAGCTATTGCTTCGACTTTTACCTATATGGACGA 1029
Query 1014 TGCTTCTAATGTTTGCAGTCATATTCCAGCAACCCGCAACCTTTTTCACAAAGCAAGGTA 1073
||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1030 TGCTTCTTATGTTTGCAGTTATATTCCAACAACCCGCGACCTTTTTCACAAAGCAAGGTA 1089
Query 1074 TGACTATGAAGAGAAACATCGGACCAAACTTCAAAATCCCACCCGCAACGCTACAAAGCA 1133
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1090 TGACTATGAAGAGAAACATCGGACCAAACTTCAAGATCCCACCAGCAACACTACAAAGCA 1149
Query 1134 CAATCACTTTATCCATAATCCTTCTTATGCCCTTTTACGACAAAATCTTGATACCAATCG 1193
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1150 CTATCACTTTATCCATAATCCTTCTTATGCCCTTCTACGACAAAATCTTGATACCGATCG 1209
Query 1194 CCaaaaaattaacgaaaaacgaaaaaGGTATTTCCGTCAAGGAAAGAATGGGGATTGGGA 1253
|||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1210 CCAAAAAACTAACGAAAAACGAAAAGGGTATTTCTGTGAAGGAAAGAATGGGGATTGGGA 1269
Query 1254 TGTTCCTATCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1313
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TGTTCCTGTCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1329
Query 1314 TAAGCAAAATGATGAAGACTACACCGAATTTGGA-TCCGTTGAGCATATTGTGGCTCCTA 1372
||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||
Sbjct 1330 TAAGCAAAATGATGAAGACTACACCTAATTTGGACCCCG-TAAGCATATTGTGGCTCCTA 1388
Query 1373 CCTCAATACATTCTATTGGGAATATCGGACATTTTCACGGTTGTTGGAATGCAAGAGTTC 1432
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1389 CCTCAGTACATTCTATTGGGAATCTCGGACATTTTCACAGTTGTTGGAATGCAAGAGTTC 1448
Query 1433 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1508
Query 1493 TTCGGTGTGGGGAGTTTTGTTAGTGCTGCGTTGATTTCGATAATCGAGACTTACTCGAGC 1552
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1509 TTCGGTGTGGGGAGTTTTGTGAGTGCTGCGTTGATTTCGATAATAGAGACTTACACGAGC 1568
Query 1553 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1628
Query 1613 TATTATTGGCTTTTGGCTTTCACTAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1672
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1629 TATTATTGGCTTTTGGCTTTCACAAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1688
Query 1673 AAGCATTTCAAGAGTAGAAGTGATGCTGATGATCAATGTGATACAAATTGTTAA 1726
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1689 AAGCATTTCAAGAGTAGAAGTGATGATGATGATCAATGTGATACAAATTGTTAA 1742
> AT3G01350.1 | Symbols: | Major facilitator superfamily protein
| chr3:135024-137460 FORWARD LENGTH=1692
Length=1692
Score = 575 bits (311), Expect = 5e-163
Identities = 508/600 (85%), Gaps = 25/600 (4%)
Strand=Plus/Plus
Query 75 AGAAAAGAAGAGGACTTAGCAAATCTTGTGCTCTTCTCATAGTGATTGCTGGG-ATAGAG 133
|||| | ||||||||||||||| || ||||| ||||||||||||||||| ||| || |||
Sbjct 14 AGAAGACAAGAGGACTTAGCAAGTCATGTGCCCTTCTCATAGTGATTGC-GGGAATGGAG 72
Query 134 AGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACATATCTAACTGATGTGGTGAAG 193
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 73 AGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACATATCTAACAGATGTAGTGAAG 132
Query 194 ATGAGCAATTCAAGAGCAGCCACGACTGTTAACACTTGGAG-TGGCTTCACTT-TCATGT 251
||||| |||||||||||||||| ||||||||||||||| | ||| ||||||| | ||||
Sbjct 133 ATGAGTAATTCAAGAGCAGCCAAAACTGTTAACACTTGG-GCTGGTTTCACTTCT-ATGT 190
Query 252 TGCCTCTCTTCTCTGCTCCTTTCGCCGATTCTTATTGGGACAGATTCTTCACCATCCTTG 311
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 191 TGCCTCTCTTCTCTGCTCCTTTGGCTGATACTTATTGGGACAGATTCTTCACCATCCTTG 250
Query 312 CTTCTTCTTCTC-TCTACTTTGTGGGTCTAGTGGGATTGACATTTACGGCATATGCTGGG 370
|||||||||| | ||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 251 CTTCTTCTTC-CGTCTACTTTGTGGGACTAGTGGGATTGACATGGACGGCATTTGCTGGG 309
Query 371 TCACGTTCCA-CTACAAAAACCATCTCT-CTTTACTTCCTCTACACTTCACTCTCCCTCG 428
|||||||| | |||| || || |||||| ||| |||| |||||| ||||||| | || |
Sbjct 310 TCACGTTC-AGCTACTAAGACTATCTCTTCTT-ACTTTCTCTACTCTTCACTATGTCTTG 367
Query 429 TCGCTCTTGGCCTT-GGCGTCTTAAACCCATCTCTACAAGCCTTTGGTGCTGACCAGCTC 487
|| | | || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 368 TCTCAATCGGT-TTAGGCGTCTTAAACCCTTCTCTTCAAGCCTTTGGTGCAGACCAACTC 426
Query 488 GACCATGACCTTGACCAAGGCCATGACCACGAGCCATCCTCAGA-GAACAAA-GAA-GTC 544
||||| ||||| || ||| || | || | ||||| | || |||| | | | |
Sbjct 427 GACCACGACCTCGAT-AAGA--ATTTC---GATCTTTCCTCGGGTGATCAAAAGGACG-C 479
Query 545 -AAATCGAACCGCAAGACTAAGTTTTTCCAATGGTGGTACTTTGGTGTCTGCGCCGGTAG 603
||| | | ||| |||||| |||||||||||| |||||||||||| |||||| |||| ||
Sbjct 480 GAAAGCTACCCGAAAGACTCAGTTTTTCCAATTGTGGTACTTTGGCGTCTGCACCGGCAG 539
Query 604 TCTTCTAGGAGTCACCGTCATGGCTTATATCCAAGACACGTTTGGTTGGGTTATCGGTTT 663
||| | || ||||| |||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 540 CCTTATGGGTGTCACAGTCATGGCTTATATTCAAGACACTTTTGGTTGGGTTCTCGGTTT 599
Score = 510 bits (276), Expect = 1e-143
Identities = 614/773 (79%), Gaps = 40/773 (5%)
Strand=Plus/Plus
Query 950 AAAACCGG-TTTCTCAGGGCTTGA-AACCGTCAAGCTATTGCTTCGGCTTTTACCTATAT 1007
|||| ||| |||||| || |||| || || ||| || || |||| ||||| || ||||
Sbjct 901 AAAA-CGGTTTTCTCTGGAATTGATAA-TGTTAAGTTAGTGATTCGCCTTTTCCCCATAT 958
Query 1008 GGACGATGCTTCTAATGTTTGCAGTCATATTCCAGCAACCCGCAACCTTTTTCA-CAAAG 1066
||| ||||||||| ||||| || || || ||||||| ||| ||||||||||||| ||||
Sbjct 959 GGATGATGCTTCTCATGTTCGCGGTTATCTTCCAGCTACCAGCAACCTTTTTCACCAAA- 1017
Query 1067 CAAGGTATGACTATGAAGAGAAACA-TCGGACCAAACTTCAAAATCCCACCCGCAACGCT 1125
|||||| |||||||||||||||||| | || || ||||||||||||||||| ||||| ||
Sbjct 1018 CAAGGTGTGACTATGAAGAGAAACATTGGGTCC-AACTTCAAAATCCCACCTGCAACCCT 1076
Query 1126 ACAAAGCACAATCACTTTATCCATAATCCTTCTTATGCCCTTTTACGACAAAATCTTGAT 1185
|||||||| ||||| ||||| || ||||| |||||||| || || || || || |||||
Sbjct 1077 GCAAAGCACGATCACATTATCAATCATCCTGCTTATGCCATTATATGATAAGATTTTGAT 1136
Query 1186 ACCAATCGCCaa-aaaattaacgaaaaacgaaaaaGGTATTTCCGTCAAGGAAAGAATGG 1244
||| || |||| | ||| || |||||||| | |||||| || || | ||| ||||| |
Sbjct 1137 ACCTATTACCAAGAGAATCAA-GAAAAACGGTACAGGTATCTCTGTGATGGAGAGAAT-G 1194
Query 1245 GGA-TTGGGATGTTCCTATCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAA 1303
||| | || ||||| ||||||||||| |||||||||||||| || |||||||||| |||
Sbjct 1195 GGAGTCGGAATGTTTCTATCCATCATTGCCATTGTTATTGCGGCAATAGTCGAAAGGAAA 1254
Query 1304 AGACTAAAGATAAG-CAAAATGATGAAGACTACACC-GAATT-TG-----G-ATCCGT-- 1352
|||||| ||||| ||||| |||||||||| ||| | ||| || | | ||||
Sbjct 1255 AGACTAGCCATAAGCCAAAA-GATGAAGACTTTACCTG-ATTATGATCCAGAAACCGTCC 1312
Query 1353 ---TGAGCATATTGTGGCTCCTACCTCAATACATTCTATTGGGAATATCGGACATTTTCA 1409
||||||| || ||||| || ||||| ||||| || |||||||| || || || ||||
Sbjct 1313 CACTGAGCATCTTCTGGCTGCTGCCTCAGTACATCCTCTTGGGAATCTCAGATATATTCA 1372
Query 1410 CGGTTGTTGGAATGCAAGAGTTCTTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGG 1469
| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 1373 CAGTCGTTGGGATGCAAGAGTTTTTCTACAGTGAGGTTCCTGTAAGAATGAGAACAATGG 1432
Query 1470 GATTTGCTTTGTACACAAGCGTTTTCGGTGTGGGGAGTTTTGTTAGTGCTGCGTTGATTT 1529
|||||||| | |||||||| ||||| ||||| || || ||||| || || || |||| |
Sbjct 1433 GATTTGCTCTCTACACAAGTGTTTTTGGTGTTGGAAGCTTTGTGAGCGCCGCACTGATCT 1492
Query 1530 CGATAATCGAGACTTACTCGAGCTCAAGAGGTGGA-AAACATAACTGGTTTGCAGATGAT 1588
| || ||||| ||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct 1493 CAATTGTCGAGGCTTACTCGAGCTCAACAGGT-GACCGACAAAACTGGTTTGCAGATGAT 1551
Query 1589 ATGTCGGAAGCTAGACTTGATAACTATTATTGGCTT-TTGGCT-TTCACTAGTGCTATTA 1646
|||||||||||| | ||||| || || || |||||| ||| || || || ||| | || |
Sbjct 1552 ATGTCGGAAGCTCGGCTTGACAAATACTACTGGCTTCTTG-CTCTT-ACAAGTACAATAA 1609
Query 1647 GCTTCT-T-GATGTATAT-TGTTATTTGCAAGCATTTCAAGAGTAGAAGTGAT 1696
|||| | | | | || || | || | |||||| |||||||||||| ||||||
Sbjct 1610 GCTT-TGTAG-TCTACATAT-TTCTATGCAAGTTTTTCAAGAGTAGCAGTGAT 1659
> AT3G01360.1 | Symbols: | Family of unknown function (DUF716)
| chr3:136399-138731 REVERSE LENGTH=1910
Length=1910
Score = 259 bits (140), Expect = 6e-68
Identities = 282/350 (81%), Gaps = 12/350 (3%)
Strand=Plus/Minus
Query 1353 TGAGCATATTGTGGCTCCTACCTCAATACATTCTATTGGGAATATCGGACATTTTCACGG 1412
||||||| || ||||| || ||||| ||||| || |||||||| || || || ||||| |
Sbjct 1439 TGAGCATCTTCTGGCTGCTGCCTCAGTACATCCTCTTGGGAATCTCAGATATATTCACAG 1380
Query 1413 TTGTTGGAATGCAAGAGTTCTTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGAT 1472
| ||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct 1379 TCGTTGGGATGCAAGAGTTTTTCTACAGTGAGGTTCCTGTAAGAATGAGAACAATGGGAT 1320
Query 1473 TTGCTTTGTACACAAGCGTTTTCGGTGTGGGGAGTTTTGTTAGTGCTGCGTTGATTTCGA 1532
||||| | |||||||| ||||| ||||| || || ||||| || || || |||| || |
Sbjct 1319 TTGCTCTCTACACAAGTGTTTTTGGTGTTGGAAGCTTTGTGAGCGCCGCACTGATCTCAA 1260
Query 1533 TAATCGAGACTTACTCGAGCTCAAGAGGTGGA-AAACATAACTGGTTTGCAGATGATATG 1591
| ||||| ||||||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct 1259 TTGTCGAGGCTTACTCGAGCTCAACAGGT-GACCGACAAAACTGGTTTGCAGATGATATG 1201
Query 1592 TCGGAAGCTAGACTTGATAACTATTATTGGCTT-TTGGCT-TTCACTAGTGCTATTAGCT 1649
||||||||| | ||||| || || || |||||| ||| || || || ||| | || ||||
Sbjct 1200 TCGGAAGCTCGGCTTGACAAATACTACTGGCTTCTTG-CTCTT-ACAAGTACAATAAGCT 1143
Query 1650 TCT-T-GATGTATAT-TGTTATTTGCAAGCATTTCAAGAGTAGAAGTGAT 1696
| | | | | || || | || | |||||| |||||||||||| ||||||
Sbjct 1142 T-TGTAG-TCTACATAT-TTCTATGCAAGTTTTTCAAGAGTAGCAGTGAT 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85340926500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5