BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488368
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15230.1 | Symbols: GASA4 | GAST1 protein homolog 4 | chr5:4... 869 0.0
> AT5G15230.1 | Symbols: GASA4 | GAST1 protein homolog 4 | chr5:4944900-4946216
FORWARD LENGTH=629
Length=629
Score = 869 bits (470), Expect = 0.0
Identities = 580/628 (92%), Gaps = 28/628 (4%)
Strand=Plus/Plus
Query 1 AAACTCCTCTCTCAGTACACTTCTTTTCATACCTCAAACaaaaaaaGATACCAAAACTAG 60
|||||||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 10 AAACTCCTCTCTCAGTACACTTCTTTTCATACCT----C-----AAGAGACTAAAACTAG 60
Query 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120
Query 121 GCTAAGTCATGTGGAGCTATCTTCCTCTTGGCTCTCATTGTCCTCTTCATGCTTCAAACC 180
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 GCTAAGTCATATGGAGCTATCTTCCTCTTGACCCTCATTGTCCTCTTCATGCTTCAAACC 180
Query 181 ATTGTTATGGCCTCAAGTGGATCTAATGTAAATTTGAGCCAGAAACGTTATGGACCAGGA 240
|| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 181 ATGGTTATGGCCTCAAGTGGATCTAATGTGAAGTGGAGCCAGAAACGTTATGGACCAGGA 240
Query 241 AGCCTGAAACGTTACC-AATGCCCATCGGAATGCGATAGGAGGTGTAAAAAGACACAGTA 299
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 AGCCTGAAACGT-ACCCAATGCCCATCGGAATGTGATAGGAGGTGTAAAAAGACACAGTA 299
Query 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGAAAGTGTCTCTGTGTGCCTCC 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGGAAGTGTCTCTGTGTGCCTCC 359
Query 360 GGGTTACTATGGGAACAAACAAGTTTGCTCTTGCTACAACAACTGGAAAACTCAAGAGGG 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGGTTACTATGGGAACAAACAAGTTTGCTCCTGCTACAACAACTGGAAAACTCAAGAGGG 419
Query 420 TGGACCTAAATGCCCTTGAAATAATCTCACTTATCGTTCCTCtttttttttAATAAAAAT 479
|||||| |||||||||||||| |||||| ||| |||||| |||||| | |||||||||
Sbjct 420 TGGACCAAAATGCCCTTGAAAAAATCTCCCTT--CGTTCC-CTTTTTAT--AATAAAAAT 474
Query 480 GT-CAACTATAACTAAATCTCCTTTGATGAATGTTTTATCTACTTTATTCCGAATGTTGT 538
| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 475 TTTCAACTATAACTAAATTTCCTTTGATCAATGTTTTATCTACTTTATTCCTAATGTTGT 534
Query 539 AATGTTATGTCACTCCTTTT-G--TT-----CTAAATCCTaaaaaaa-TGAGAGTGGCC- 588
|||||||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct 535 AATGTTATGTCACTCCTTTTCGGATTTTGTTCTAAATCCTAAAAAAAATGAGAGTGGCCC 594
Query 589 TATGAATGATATTTT-CATGAATACTTG 615
||||||||||||||| ||||||||||||
Sbjct 595 TATGAATGATATTTTTCATGAATACTTG 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5