BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488386
Length=3459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15400.1 | Symbols: | U-box domain-containing protein | chr... 5360 0.0
> AT5G15400.1 | Symbols: | U-box domain-containing protein | chr5:4997611-5003140
REVERSE LENGTH=3503
Length=3503
Score = 5360 bits (2902), Expect = 0.0
Identities = 3184/3319 (96%), Gaps = 23/3319 (1%)
Strand=Plus/Plus
Query 157 TCTCAAATCGAGTTTCGAGTG-TTGATTTGATTCGTAAAATCAATGGCGACGAGCAAACC 215
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 191 TCTCAAATCGAGTTTCGAGTGTTTGATTTGATTCGTAAAATCAATGGCGACGAGCAAACC 250
Query 216 TCAAAGATCGCCGGCTGAAATTGAGGATATTATCCTCCGGAAGATATTTTATGTAACCCT 275
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 251 TCAAAGATCGCCGGCTGAAATTGAGGATATAATCCTCCGGAAGATATTTTATGTAACCCT 310
Query 276 AACGGAATCAGCTGATTCCGATCCTCGAATTGTTTACTTGGAGATGACGGCCGCTGAGAT 335
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 311 AACGGAATCAACTGATTCCGATCCTCGTATTGTTTACTTGGAGATGACGGCCGCTGAGAT 370
Query 336 TCTCAGCGAAGGTAAAGAGCTTTTGCTTTCTCGTGATTTGATGGAGAGAGTTCTCATAGA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTCAGCGAAGGTAAAGAGCTTTTGCTTTCTCGTGATTTGATGGAGAGAGTTCTCATAGA 430
Query 396 TCGTCTCTCCGGCGACTTTTCCGACGCTGAACCGCCTTTCCCGTATTTACTCGGTTGCTA 455
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 431 TCGTCTCTCCGGCGACTTTTCCGACGCCGAACCGCCTTTCCCGTATTTAATCGGTTGCCA 490
Query 456 CCGTCGTGCTTACGACGAATCGAAGAAAATCCAGTCGATGAAGGACAAGAATCTGAGATC 515
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 491 CCGTCGTGCTTACGACGAATCGAAGAAAATCCAGTCGATGAAGGATAAGAATCTGAGATC 550
Query 516 GGAGATGGAGATTGTGACTAAACAGGCGAAGAAGCTTGCTGTTTCTTACTGTAGGATTCA 575
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 551 GGAGATGGAGATTGTCACTAAACAAGCGAAGAAGCTTGCTGTTTCTTACTGTAGGATTCA 610
Query 576 CTTGGGGAATCCTGATATGTTTGGGAACTCGGATAAACCTACCGGTGGACTGGATAATAG 635
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 611 CTTGGGGAATCCTGACATGTTTGGGAACTCGGATAAACCTAGTGGTGGATTGGATAATAG 670
Query 636 GTTGAAGAAGAGGAATGTCTCTCCGGTTCTGCCGTTGATCTTTGCTGAGGTTGGTTCTGG 695
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 671 GTTGAAGAAGAGGAATGTCTCTCCGGTTCTTCCGTTGATCTTTGCTGAGGTTGGTTCTGG 730
Query 696 TTCGTTGGATATGTTTGGAGCTAGTAGCAGTGGGGTTCAGGCTCCTCCGGGGTTTTTGGA 755
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 731 TTCGTTGGATATGTTTGGAGCTAGTAGCAGTGGGGTTCAAGCTCCTCCTGGGTTTTTGGA 790
Query 756 TGAGTTCTTCAAAGATTCAGATTTTGATAGCTTGGACCCGATTCTAAAGGAGCTGTATGA 815
|||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 791 TGAGTTTTTCAAAGACTCGGATTTTGATAGCTTGGACTCGATTCTAAAGGAGCTGTATGA 850
Query 816 GGATTTGAGGTCTACGGTTATAAATGTATCAGTGCTTGGAGATTTCCAGCCACCATTGAG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 851 GGATTTGAGGTCTACGGTTATAAATGTATCAGTGCTTGGAGATTTCCAGCCACCACTGAG 910
Query 876 GGCACTTAAGTATCTTGTTAGCTTACCAGTAGGAGCTAAATCTCTGGTTAGTCACCAGTG 935
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 911 GGCACTCAAGTATCTTGTTAGCTTACCAGTAGGAGCTAAATCTCTGGTTAGTCATGAGTG 970
Query 936 GTGGATTCCACGGGGTGCCTATATGAACGGCCGAGCAATGGAGTTGACTAGCATTCTTGG 995
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GTGGGTTCCACGGGGTGCCTATATGAACGGCCGAGCAATGGAGTTGACTAGCATTCTTGG 1030
Query 996 CCCTTTCTTCCATATTAGCT-CGCTGCCAGATAATTCGCTATTCAAGAGTCATCCTGATG 1054
||||||||||||||||| | |||||||||||||| | |||||||||||||| |||||||
Sbjct 1031 GCCTTTCTTCCATATTAG-TGCGCTGCCAGATAATACACTATTCAAGAGTCAACCTGATG 1089
Query 1055 TTGGGCAGCAGTGTTTCTCTGAAGCATCGGAACGTCGTCCCGCAGATTTATTATCATCCT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTGGGCAGCAGTGTTTCTCTGAAGCATCGGAACGTCGTCCCGCAGATTTATTATCATCCT 1149
Query 1115 TCTCCACGATTAAAAATTTCATGAACATTTTGTACAGCGGGCTGCATGATGTACTGATGA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1150 TCTCCACGATTAAAAATTTCATGAACATTTTGTACAGCGGGCTGCATGATGTATTGATGA 1209
Query 1175 TTTTACTTAAAAGTACCGATACCCGTGAGTGTGTTTTACAGTTTCTTGCAGAGGTGATCA 1234
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1210 TTTTACTTAAAAGTACTGATACCCGTGAGCGTGTTCTACAGTTTCTTGCAGAGGTGATCA 1269
Query 1235 ATGCAAATGCGTCGAGAGGCCATATACAGGTTGATGCAGTCTCTTGTGCTAGCTCAGGCA 1294
||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1270 ATGCAAATGCGTCTAGAGCCCATATACAGGTTGATCCAGTCTCTTGTGCTAGCTCAGGCA 1329
Query 1295 TGTTTGTTAACCTCAGTGCAGTAATGCTCCGGCTCTGTGAACCATTTTTAGACCCACATT 1354
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGTTTGTTAACCTTAGTGCAGTAATGCTCCGGCTCTGTGAACCATTTTTAGACCCACATT 1389
Query 1355 TAACTAAAAGGGATAAGATTGATCCAAAATATGCATTCTGTGGTCATCGCTTAAAATTAA 1414
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1390 TAACGAAAAGGGATAAGATTGATCCAAAATACGCATTCTGTGGCCATCGCTTAAAATTAA 1449
Query 1415 GCGACTTGACTGCTCTCCATGCATCATCCGAAGAAGTTTCTGAGTGGATTGGCAAAGATG 1474
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1450 GCGACTTGACCGCTCTCCATGCATCATCCGAAGAAGTTACTGAGTGGATTGGCAAAGATG 1509
Query 1475 CTATGGCAAACGTAAATGGTGCTGGGCGAGAAAACGGGAACGAAAGTCGCTTGTTACAAT 1534
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1510 CTATGGCAAACGCAAATGATGCTGGGCGAGAAAATGGGAACGAAAGTCGCTTGTTACAAT 1569
Query 1535 CCAAAGAAGCCACAAGTTCTAGTAGTAATGCTTCTGGGCAAAATGCAAAGTCAGCAACTA 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CCAAAGAAGCCACAAGTTCTAGTAGTAATGCTTCTGGGCAAAATGCAAAGTCAGCAACTA 1629
Query 1595 AATACACTTTCATTTGTGAATGCTTCTTTATGACTGCGAGGGTCCTCAATTTGGGTCTCC 1654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1630 AATACACTTTCATTTGTGAATGCTTCTTTATGACTGCTAGGGTCCTCAATTTGGGTCTCC 1689
Query 1655 TAAAAGCACTCTCTGACTTTAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGATAATC 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TAAAAGCACTCTCTGACTTTAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGATAATC 1749
Query 1715 TTGCAACACTAAAAGCCATGAGAGATCAAGCACCTTCTCCACAGTTGGAACTTGATATAT 1774
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 TTGCAACGCTAAAAGCCATGAGAGATCAAGCACCTTCTCCACAGTTGGAACTTGATATAT 1809
Query 1775 CCCGAATGGAAAAAGAACTAGAGCTGTATTCGCAGGAAAAGCTTTGCCATGAGGCCCAAA 1834
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1810 CCCGAATGGAAAAAGAACTAGAGCTGTCTTCGCAGGAAAAGCTTTGCCATGAGGCCCAAA 1869
Query 1835 TATTGAGGGATGGAGATTTTATTCAGCGAGCTCTTTCTTTCTATCGCCTAGTGGTTGTTT 1894
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1870 TATTGAGGGATGGAGATTTTATTCAGCGAGCTCTGTCTTTCTATCGCCTAATGGTTGTTT 1929
Query 1895 GGTTAGTTGGACTAGTTGGTGGCTTTAAGATGCCTCTACCGTCAACTTGCCCCATGGATT 1954
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1930 GGTTAGTTGGACTAGTCGGTGGCTTTAAGATGCCTCTACCGTCAACTTGCCCTATGGAAT 1989
Query 1955 TCTCCTGTATGCCTGAGCATTTTGTTGAAGATGCAATGGAGTTGCTGATATTCGCTTCAA 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 TCTCCTGTATGCCTGAGCATTTTGTTGAAGATGCAATGGAGTTGCTGATATTCGCTTCAA 2049
Query 2015 GAATCCCCAAAGCTTTGGACGGGGTGCCACTGGACGACTTTATGAACTTCATAATCATGT 2074
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2050 GAATTCCCAAAGCTTTGGACGGGGTGCCGCTGGACGACTTTATGAACTTCATAATTATGT 2109
Query 2075 TCATGGCAAGTCCTGAATATATTAGAAACCCATATCTCAGAGCAAAGATGGTTGAAGTTC 2134
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2110 TCATGGCAAGTCCTGAATATGTTAGAAACCCGTATCTCAGAGCAAAGATGGTTGAAGTTC 2169
Query 2135 TGAACTGCTGGATGCCTCGTTCAAGTAGTTCTTCTTCTGCTACGTCTACTCTCTTTGAGG 2194
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2170 TGAACTGCTGGATGCCTCGTTCAAGTAGTTCTTCTTCTGCTACATCTACTCTCTTTGAGG 2229
Query 2195 GGCATCAGTTATCACTCGAGTATCTTGTCAGGAATTTACTGAAATTATATGTTGACATTG 2254
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2230 GACATCAGTTATCGCTCGAGTATCTTGTCAGGAATTTACTGAAACTATATGTTGACATTG 2289
Query 2255 AGTTCACGGGTTCACACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCTG 2314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2290 AGTTCACGGGTTCACACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCCG 2349
Query 2315 AGCTATTAGAGTATCTCTGGCAGGTGCCTAGTCACCGAAATGCGTGGAGACGGATTGCAA 2374
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2350 AGCTTTTAGAGTATCTCTGGCAGGTGCCTAGTCACCGAAATGCATGGAGACGGATTGCAA 2409
Query 2375 AAGACGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTTTTAGTCAATGATAGCATTT 2434
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2410 AAGACGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTCTTAGTCAATGATAGCATCT 2469
Query 2435 ATCTTCTGGATGAAAGTCTAAACAAAATTCTCGAGATTAAACAAATCGAGGCAGAGATGT 2494
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2470 ATCTTCTGGATGAAAGTCTAAACAAAATTCTCGAGATTAAACAAATCGAGGCAGACATGT 2529
Query 2495 CGAATACTGCAGAGTGGGAGCAGAGACCAACTCAAGAGAGACAGGAGAGAACAAGACTCT 2554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2530 CAAATACTGCAGAGTGGGAGCAGAGACCAACTCAAGAGAGACAGGAGAGAACAAGACTCT 2589
Query 2555 TCCATTCGCAGGAGAATATTGTTAGAATCGACATGAAGCTGGCAAATGAAGATGTGACTA 2614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 TCCATTCGCAGGAGAATATTGTTAGAATCGACATGAAGCTGGCAAATGAAGATGTGACTA 2649
Query 2615 TGCTTGCATTTACATCCGAGGAGATCACTGCCCCTTTTCTACTACCTGAGATGGTTGAGA 2674
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2650 TGCTTGCATTTACATCCGAGGAGATCACTGCCCCTTTCCTACTCCCTGAGATGGTTGAGA 2709
Query 2675 GGGTTGCCAATATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAGCGTAAATCGT 2734
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2710 GGGTTGCCAACATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAGCGTAAATCTT 2769
Query 2735 TAAGCTTGAAAGATCCTGAGAAGTATGAATTCCGTCCAAAACAGTTACTTAAACAGATTG 2794
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2770 TAAGCCTGAAAGATCCTGAGAAATATGAATTCCGTCCAAAACAGTTACTTAAACAGATCG 2829
Query 2795 TTCGCATATATGTTAATCTCGCAAGAGGAGACACGGAAAACATATTCCCTGGTGCCATTT 2854
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 2830 TTCGCATATATGTTAATCTCGCAAGAGGAGACACAGTAAACATATTCCCTGGTGCCATCT 2889
Query 2855 CCAGTGATGGCCGATCATATAACGAACAGCTATTCAATGCAGGAGCAGATGTGCTTAGAA 2914
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2890 CCAGTGATGGCCGATCATATAATGAACAGCTATTCAATGCAGGAGCAGATGTGCTTAGGA 2949
Query 2915 GAATAGGTGAAGAGGGAAGAATCATTCAAGATTTTATGGAGTTAGGCACAAAAGCCAAAG 2974
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2950 GAATAGGTGAAGAGGGAAGAATCATTCAAGAGTTTATGGAGTTAGGCACAAAAGCCAAAG 3009
Query 2975 CTGCTGCTTCTGAAGCTCTGGATGCTGAAGCTGCACTTGGCGAAATACCAGACGAGTTCC 3034
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3010 CTGCTGCTTCTGAAGCTCTGGATGCTGAAGCTGCACTTGGGGAAATACCAGACGAGTTCC 3069
Query 3035 TTGACCCAATTCAGTACACACTAATGAGAGATCCAGTGATTCTTCCAAGCTCAAGAATCA 3094
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 3070 TTGACCCAATTCAGTACACGCTAATGAGAGATCCAGTAATACTTCCAAGCTCAAGAATCA 3129
Query 3095 CAGTTGATCGACCCATCATTCAACGTCATCTTCTCAGCGACAATCACGATCCGTTTAACC 3154
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 3130 CAGTTGATCGTCCCATCATTCAACGTCATCTTCTCAGCGACAATCATGATCCATTTAACC 3189
Query 3155 GAGCACATTTGACATCGGATATGTTGATACCGGACATCGAATTGAAGGCGAAAATCGATG 3214
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3190 GAGCACATTTGACATCGGATATGTTGATACCGGACATCGAGTTGAAGGCGAAAATCGATG 3249
Query 3215 AGTTTGTGAAGTCGCATCAGTCTAAGAAACGAACAAGTGGAGAAGATAGCAGCAACAAGG 3274
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3250 AGTTTGTGAAGTCGCATCAGTCTAAGAAACGGACAAGTGGAGAAGATAGCAGCAACAAGG 3309
Query 3275 AAAGGATACAGACTACAAGCAGTGATATGTTAATTGATTAATTATGTGTTCCAAAAATAA 3334
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 3310 AAAGGATACAGACTACAAACAGTGATATGTTAATTGATTAATTATGTGTTCCAAAAGTAA 3369
Query 3335 ttttttttta-ctttttgtt-agg-ctcttttttttt-CTATT---AGGATTGCGACTCT 3387
| || | || || ||| || ||||||||| || || ||| || | |||
Sbjct 3370 CAAAATAATAACAATTA-TTCAGGACTTTTTTTTTTTACTTTTGCTAGGCTTTCTTTTCT 3428
Query 3388 CA--AGTG-TTTATCTATCT-T---AGGGCTTGCTTTCCAATTATTTGATGCCACGGAAA 3440
| || | ||||||||||| | ||||||||||||||| |||||||||||||||| ||
Sbjct 3429 -ATTAG-GATTTATCTATCTATTTTAGGGCTTGCTTTCCACTTATTTGATGCCACGGGAA 3486
Query 3441 TaaaaaaaCTTATAAATAT 3459
||||| |||||||||||
Sbjct 3487 -AAAAA--CTTATAAATAT 3502
Score = 220 bits (119), Expect = 6e-56
Identities = 147/160 (92%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 1 AAGAGTTCATAAACAAAAACCTACTCCCAGAAATTTCTTCCAAATCTC--GCCATGGTTT 58
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 7 AAGAGTTCATAAACAAAAACCTACTCCCAGAAAGTTCTTCCAAATCTCTCGCCATGGTTT 66
Query 59 CTCTCATCTTTCGTAAATTTTAGTTTTTC-AATATTTAATTATACTTTAAATTGATAAGT 117
||||| |||||||| |||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 67 CTCTCTTCTTTCGTGAATTTTAGTTTTTCTAA-ATTTAATTATACTTTAAATTGCTAAGT 125
Query 118 CCCAACTCTTTCGCTTCTGATTCATCGCTGATACACGTTT 157
|| ||||||||||||| |||||||||| | ||||| ||||
Sbjct 126 CCAAACTCTTTCGCTTTTGATTCATCGGTAATACAAGTTT 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 172172948376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5