BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488420
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15760.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr5... 902 0.0
AT1G68590.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1... 148 5e-35
> AT5G15760.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr5:5143053-5144053
FORWARD LENGTH=747
Length=747
Score = 902 bits (488), Expect = 0.0
Identities = 578/622 (93%), Gaps = 4/622 (1%)
Strand=Plus/Plus
Query 1 GCTCGCTAAGAAGCTTCAAACGCTTTAGCTGAAATGGCGGTTCAATCAAATCAGAGTGCT 60
||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 18 GCTCGCTTAGAAGCTTCAAACGC---AGCTGAAATGGCGGTTCAAGCAAATCAGAGTGCT 74
Query 61 TCTTTTGGGTTCAGAACAGCTTCACCTTCTCAGAAGCTCTCTTCGAAACATGTTGTTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 75 TCTTTTGGGTTCAGAACAGCTTCACCTTCTCAGAAGCTCTCTTCGAAACCCATAGCTCAT 134
Query 121 ATTTCGCTGGCAACGAAGCTCAAATACTCTTCTCTAGCGTCGATCTCGTGCTCTACTTGG 180
|| || || | |||||||||||| |||||||| | | ||| | |||||||||||||||
Sbjct 135 ATCTCTCTATCGACGAAGCTCAAACCCTCTTCTCGACCATCGCTTTCGTGCTCTACTTGG 194
Query 181 AATCCTGGTCAAATTCCGACGAGACACTCCGGTAAAAATCCCGGAATATTCGCATCTGCC 240
|||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| | ||
Sbjct 195 AATCAGGGTCAAATTCCGGCGAGACACTCCTGTATCAATCCCGGAATATTCGCATATCCC 254
Query 241 CCCTCCAATCTTACCTTCTCTCATGAACCACCAGAATCTGTATCTCCGCCACTTGGAAAG 300
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 255 CCCTCCAATCTTACCTTCTCTCATGAACTACCAGAATCTGAATCTCCGCCACTTGGAAAG 314
Query 301 AAGAAGATGCGGGTGTTAGTGAAGCCGCTGGAGAAACCAAAGGTGGTACTAAAGTTTGTG 360
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 315 AAGAAGATGCGTGTGTTAGTGAAGCCGCTAGAGAAACCAAAGGTGGTACTGAAGTTTGTA 374
Query 361 TGGATGCAAAAGGACATAGGAGTTGCGTTAGACCATATGATTCCAGGGTTTGGAACAATC 420
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 375 TGGATGCAAAAGGACATAGGAGTTGCATTAGACCATATGATTCCAGGATTTGGAACAATC 434
Query 421 CCACTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAGCTTTG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 CCACTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAACTTTG 494
Query 481 TTAGAGAGCAAGCCTTGGATCTCTGAGCTTCATCGCGTCTTCCTCCTTAACCAAGCTACA 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 495 TTAGAGAGCAAGCCTTGGATCTCTGAGCTTCATCGTGTCTTCCTCCTTAACCAAGCTACA 554
Query 541 GACATCATCAATCTTTGGCAATCAAGTGGTGGAGATTTGTCTTGATT-GGATTCACCAGA 599
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 555 GACATCATCAATCTTTGGCAATCAAGCGGTGGAGATTTGTCTTGATTTGGATTCACCAGA 614
Query 600 CATATCTGTTTATCATAGGTAT 621
|||||||||||||||||||||
Sbjct 615 TATATCTGTTTATCATAGGTAT 636
> AT1G68590.1 | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757404-25758232
REVERSE LENGTH=753
Length=753
Score = 148 bits (80), Expect = 5e-35
Identities = 206/263 (78%), Gaps = 24/263 (9%)
Strand=Plus/Plus
Query 319 GTGAAGCC-GCTGGAGAAACCAAAG-GTGGTACTAAAGTTTGTGTGGATGCAAAAGGACA 376
|||||||| | | |||||| | ||| |||||||| ||||||||||||||| | ||| |||
Sbjct 292 GTGAAGCCAGAT-GAGAAATC-AAGAGTGGTACTCAAGTTTGTGTGGATGGAGAAGAACA 349
Query 377 TAGGAGTT-GCG-TTAGACC-ATATGATTCCAGGGTTTGGAACAATCCCACTTAGTCCAT 433
||||| || | | || |||| | ||| | || || ||| ||||||||||||||||| |
Sbjct 350 TAGGA-TTAG-GATTGGACCAACATG-TACCTGGACATGGCACAATCCCACTTAGTCCTT 406
Query 434 ACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAG-CTT-TGTTAGAGAGC-A 490
||| ||||||||||||||||||||||||||||||||| || | || | || || ||| |
Sbjct 407 ACTTCTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTTAA-GTCTACTCTT-GA-AGCTA 463
Query 491 AGCCTTGGATCTCTGAGCTTCA--TCGCGTC-TTCCTCCTTAACCAAGCTACAGACATCA 547
| || ||||||||| || | | | || ||| || | |||||||| || || ||||
Sbjct 464 AACCATGGATCTCTCAGAAGAAGAT-GA-TCATTCTTC-TAAACCAAGCCACTGATATCA 520
Query 548 TCAATCTTTGGCAATCAA-GTGG 569
||||||| |||||| ||| ||||
Sbjct 521 TCAATCTCTGGCAA-CAAAGTGG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5