BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488422
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15780.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1489 0.0
> AT5G15780.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:5144727-5146403 REVERSE LENGTH=1483
Length=1483
Score = 1489 bits (806), Expect = 0.0
Identities = 966/1039 (93%), Gaps = 27/1039 (3%)
Strand=Plus/Plus
Query 1 TCTTTTAACAATCTCTTTGTTTTTCCTGGCTCACTCATCTTCACACCACACTCCTATATA 60
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 TCTTTTAACAATCTCTTCGTTTTTCGTGGCTCACTCATCTTCACACCACACTCCTATATA 61
Query 61 TAT---CCCTCTTTCCTCGATAGATAGTGAGAGATAGAGTCGATAACTATGGAGAGAACA 117
||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 62 TATACCCCCTCTTTCCTC---CGATAGTGAGAGATAGAGTCGATAATTATGGAGAGAATA 118
Query 118 ACCAACTTATGGGTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATTAATGGAGGT 177
|| | ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 ACGACCTTATGGTTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATCAATGGAGGT 178
Query 178 CTT-TCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTCGG 236
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 -TTGTCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTAGG 237
Query 237 AACTGTCTACTGTGACACTTGTTTTAACGGTGCCTTCTCGAAATCACACAACCACTTAAT 296
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 238 AACTGTCTACTGTGACACTTGTTTTAACGGCGCCTTCTCGAAATCACCCAACCACTTAAT 297
Query 297 CCCAGGTGCTTTAGTTGCTGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTTAGACA 356
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 CTCAGGTGCTTTAGTTGCAGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTCAGACA 357
Query 357 AGAGGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAAGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 417
Query 417 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAACCTTACTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAGCCTTACTG 477
Query 477 TTCTATAGCTTCGTCCGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCTATAGCTTCGTCTGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 537
Query 537 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 597
Query 597 GATTTGTAGCCAAAAACCAATCAATCTCCCCGCGT-CCAAGCCTCTTTTACCGGATCCTT 655
|||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||
Sbjct 598 GATTTGTAGCCAAAAACCTATCAATCTCCGCG-GTTCCAAGCCTCTTTTACCGGATCCTT 656
Query 656 CATTCCCTCAACCGATCCAAGATCCTCCTAATCCTTCCCCTATCCCAAATCTCCCCATCG 715
|||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 657 CATTTCCTCCACCGCTCCAAGATCCTCCTAATCCTTCCCCTCTCCCAAATCTCCCTATCG 716
Query 716 TTCCTCCCCTTCCGAACTT----G--CC----T--C-T-T-CCGGACTTACCTATTCCTC 760
||||||| ||||| ||||| | || | | | | |||||||||||| ||||||
Sbjct 717 TTCCTCCTCTTCCAAACTTACCTGTTCCAAAGTTACCTGTTCCGGACTTACCTCTTCCTC 776
Query 761 -AGGTTCCTCCTCTTCTTCCCCCAGGACCACAGAAATCATCTTCCGTGCATAACAAGAAA 819
|| |||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||
Sbjct 777 TAG-TTCCTCCTCTTCTTCCACCAGGACCTCAGAAATCAGCTTCCTTGCATAACAAGAAA 835
Query 820 TCTGATTCCTTTAAAGACAAGAAAGCTGAAGTACTAAAACCCGATTTCTTCTTTCCGCCA 879
||||||||||| |||||||||||| | |||| |||||||||| |||||||||||||||||
Sbjct 836 TCTGATTCCTTGAAAGACAAGAAAACCGAAGCACTAAAACCCAATTTCTTCTTTCCGCCA 895
Query 880 AACCCGTTAAACCCGCCATCTATCATCCCTCCGAACCCTCTGATTCCTTCTAtcccaacc 939
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 896 AACCCGTTAAACCCGCCATCTATCATCCCTCCAAACCCGCTCATTCCTTCTATCCCAACC 955
Query 940 ccaactctccctccaaacccggtcattccttctcccccaactctccctccaatcccatta 999
|| |||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||
Sbjct 956 CCTACTCTCCCTCCAAACCCGCTTATTCCTTCTCCCCCAAGTCTCCCTCCAATCCCACTA 1015
Query 1000 atcccttctcccccaactc 1018
|||||| ||||||||||||
Sbjct 1016 ATCCCTACTCCCCCAACTC 1034
Score = 270 bits (146), Expect = 2e-71
Identities = 182/198 (92%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 1127 TCCCTCCGATCCCTCTCATCCCTGGAATCCCTCCGGTTACACCTTCCTTTTCTAGTCACC 1186
|||||||| |||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1242 TCCCTCCGGCCCCTCTCATCCCGGGAATCCCTCCTCTTTCACCTTCCTTTTCTAGTCACC 1301
Query 1187 ATCAACCTTAACTTTAGCAATCCTTTCCTCACATTTCCAATTATGTAATCTATATGTATC 1246
||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1302 ATCAACCCTAA-ATTAGCAATCCTTTCCTTACATTTCCAATTATGTAATCTATATGTATC 1360
Query 1247 ATCCTG-TTTAAATTG-t--ttttttCCTCTGCATTTTCACTTGTTGGCTTGTTGT-ATT 1301
|||| | ||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1361 ATCC-GCTTTAAATTGTTACTTTTTTCCTCTGCATTTTCACTTGTTGGCTTGTTGTCATT 1419
Query 1302 TCAATAAATATTGTTTAC 1319
||||||||||||||||||
Sbjct 1420 TCAATAAATATTGTTTAC 1437
Score = 237 bits (128), Expect = 2e-61
Identities = 225/269 (84%), Gaps = 17/269 (6%)
Strand=Plus/Plus
Query 905 TCCCTCCGAACCCTCTGATTCCTTCTAtcccaaccccaactctccctccaaacccggtca 964
||||||| ||||| || |||||||| | | |||||| ||||||||||| ||| | |
Sbjct 963 TCCCTCCAAACCCGCTTATTCCTTC--T--C--CCCCAAGTCTCCCTCCAATCCCACTAA 1016
Query 965 ttccttctcccccaactctccctccaatcccattaatcccttctcccccaactccaactc 1024
| ||| ||||||||||||||||| |||| || ||| | ||| ||||||| ||||| ||||
Sbjct 1017 TCCCTACTCCCCCAACTCTCCCTACAATTCCGTTACTTCCTACTCCCCCGACTCCTACTC 1076
Query 1025 tGCCACCGATTCCAACAATTCCGACTCTTCCGC-T-T-CCG---CTTCCACCTGTCCCAA 1078
||||||||||||||||||||||||||||||| | | | ||| |||||||||||||| |
Sbjct 1077 TGCCACCGATTCCAACAATTCCGACTCTTCCACCTCTTCCGGTTCTTCCACCTGTCCCTA 1136
Query 1079 TCGTAAATCCGCCTGCACTACCGCCACCACC---TTCTTTCCCTGTCCCGCTCCCTCCGA 1135
|||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1137 TCGTGAATCCGCCTTCACTACCGCCACCACCACCTTCTTTCCCTGTTCCGCTCCCTCCGG 1196
Query 1136 TCCCTCT-CATCCCTGGAATCCCTCCGGT 1163
||||| | ||||||| |||||||||||
Sbjct 1197 TCCCTGGAC-TCCCTGGCATCCCTCCGGT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5