BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488428
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15830.1 | Symbols: AtbZIP3, bZIP3 | basic leucine-zipper 3 ... 1234 0.0
> AT5G15830.1 | Symbols: AtbZIP3, bZIP3 | basic leucine-zipper
3 | chr5:5168543-5169361 FORWARD LENGTH=819
Length=819
Score = 1234 bits (668), Expect = 0.0
Identities = 777/827 (94%), Gaps = 17/827 (2%)
Strand=Plus/Plus
Query 1 ATTAAACTCACCCTCTTTGAGTTCTAAagagagagagagaAATTGACCATGCAGCCAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTAAACTCACCCTCTTTGAGTTCTAAAGAGAGAGAGAGAAATTGACCATGCAGCCAAAT 60
Query 61 TACGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCCACTTGAAC---TAC 117
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 TATGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCAACTTGAACAACTAC 120
Query 118 TACAACAACTTAAACCCTTCAACCAATAACAACAATCTCAATCTCCTCCAATACCCTCAA 177
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 TACAACAACTTAAACCCTTCAACCAATAACAACAACCTCAATATCCTCCAATACCCTCAA 180
Query 178 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCTACGACTTCCGATGACGCA 237
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCA 240
Query 238 ACAGAAGGAATCTTTGTCATCAATGAGAGGAAGCAACGACGTATGGTATCTAACAGAGAG 297
|| |||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 241 ACTGAAGAAATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAG 300
Query 298 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTTTCACAGGTT 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTCTCACAGGTT 360
Query 358 GCTTGGCTTCGAAGCGAGAACCACCAGCTTCTAGATAAGCTTAACCAAGTCTCCGACAAC 417
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAAC 420
Query 418 AATGATCGTGTTATTCAAGAGAACTTGAGCCTTAAAGAGGAAAACTTGGAGCTTCGTCAA 477
||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 421 AATGATCTTGTTATTCAAGAGAACTCGAGTCTTAAAGAAGAAAACTTGGAGCTTCGTCAG 480
Query 478 GTTATCACATCCGTGAAGAAGCTTGGAGGAGGGATTCATGACAAATATTCTTCTTCTTC- 536
|||||||||||| ||||||||||||||||||| || |||||||||||||||||| | ||
Sbjct 481 GTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCG 540
Query 537 -C-ATGGATGAATTGGATCAAGACTTCTCTTCTATTACAGATGATCCAAGAACGCATCAT 594
| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 541 TCTATGGATGAATTGGATCAAGACTTTTCTTCTATCACAGATGATCCAAGAACTCATCAT 600
Query 595 CCATCATGAGTACTTATTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 654
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCATCATGAGT--TG-TTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 657
Query 655 -ATCTATTTTCTTTCTTTGGTATCACttttttaacggtttaactacgtaccaaagtttgg 713
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 658 TATCTATTTTCTTTCTTTGGTATCACTTTTTAAACCGTTTAACTACGTACCAAAGTTTGG 717
Query 714 gttttatttgttttactgttgttttgtCAGATGATAATTAAATGATGGATATTTGAAGA- 772
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GTTTTATTTGTTTTTCTGTTGTTTTGTCAGAAGATAATTAAATGATGGATATTTGAAGAT 777
Query 773 GATACTGTAAACAA-GAACTTATTAATTATTCTATACATAAATTTGG 818
||| |||||||||| || |||| |||||| ||||||||||||||
Sbjct 778 GATGCTGTAAACAAAGAT-TTAT-AATTAT---ATACATAAATTTGG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5