BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488429
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein ... 1962 0.0
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:51... 693 0.0
AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:48... 431 9e-120
> AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein
with CCT domain | chr5:5171182-5172758 REVERSE LENGTH=1344
Length=1344
Score = 1962 bits (1062), Expect = 0.0
Identities = 1259/1352 (93%), Gaps = 21/1352 (2%)
Strand=Plus/Plus
Query 1 ATTAGCCCCTTCTTTCAGATACAATCTCCCACACCATCAAACTTACTACACCTGAGTTAT 60
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 1 ATTAGCCCCTTCTTTCAGATACCAGCTCCCACACCATCAAACTTACTACATCTGAGTTAT 60
Query 61 TATGTTGAAACAAGAGAGTAACGACATTGGTAGTGAAGAGAACAACAGGGCACGAGCCTG 120
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 61 TATGTTGAAACAAGAGAGTAACGACATAGGTAGTGGAGAGAACAACAGGGCACGACCCTG 120
Query 121 TGACACATGCCGGTCAAACGCCTGCACCGTGTACTGCCATGCGGATTCTGCCTACTTGTG 180
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 121 TGACACATGCCGGTCAAACGCCTGCACCGTGTATTGCCATGCAGATTCTGCCTACTTGTG 180
Query 181 CATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGTGTTGCTTCCCGCCATAAACGGGT 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 CATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGCGTTGCTTCCCGCCATAAACGTGT 240
Query 241 TCGGGTCTGCGAGTCATGTGAGCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGGTCTGCGAGTCATGTGAGCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGC 300
Query 301 ATCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTTCTAGACGCCA 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CTCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTGCTAGACGCCA 360
Query 361 TCAGCGAGTTCCAATCCTGCCAATTTCTGGAAACTCTTTCAGCTCCATGGCCA-T--TCA 417
||||||||||||||| || |||||||||||||||||||||||||||||| ||| | |||
Sbjct 361 TCAGCGAGTTCCAATTCTACCAATTTCTGGAAACTCTTTCAGCTCCATGACCACTACTCA 420
Query 418 CCACCAAAGCGAGACAACAATGACCGATCCAGAGAAGAGACTGGTGGTGGATCAAGAGAA 477
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CCACCAAAGCGAGAAAACAATGACCGATCCAGAGAAGAGACTGGTGGTGGATCAAGAGGA 480
Query 478 AGGTGAAGAAGGTGATGAGGATGCCAAGGAGGTGGCTTCGTGGCTGTTCCCTAACTCAGA 537
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct 481 AGGTGAAGAAGGTGATAAGGATGCCAAGGAGGTTGCTTCGTGGCTGTTCCCTAATTCAGA 540
Query 538 CAAAAATATCAATAACCAGAACAATGGGTTATTGTTTAGTGATGAGTATCTAGACCTTGT 597
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 CAAAAATAACAATAACCAAAACAATGGGTTATTGTTTAGTGATGAGTATCTAAACCTTGT 600
Query 598 GGATTACAACTCAAGTATGGACTACAAATTCACAGGTCAATACCA-TCAACACCAGCAAA 656
|||||||||||| |||||||||||||||||||||||| ||||| | ||||||||| ||||
Sbjct 601 GGATTACAACTCGAGTATGGACTACAAATTCACAGGTGAATAC-AGTCAACACCAACAAA 659
Query 657 ACTGCGGCGTACCACAGACGAGCTACGGGGGAGATGGAGTTGTTCCGCTTCAACTTGAAG 716
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 660 ACTGCAGCGTACCACAGACGAGCTACGGGGGAGATAGAGTTGTTCCGCTTAAACTTGAAG 719
Query 717 AATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGTTCGATATCAAATATGACT 776
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 720 AATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGTTCAATATCAAATATGGCT 779
Query 777 CCTCAGGAAGTCACTACAACGACAACTG-TTCCCTTAACCATAACGTATACATTTTATCT 835
||||||| | ||||||||||||||| || |||| |||||||||||| |||||||| |||
Sbjct 780 CCTCAGGGACTCACTACAACGACAA-TGGTTCCATTAACCATAACGCATACATTTCATCC 838
Query 836 ATGGAAACTGGCGTTGTGCCGGAGTCAACAGCACGTGACAAAACAGCTTCACACCCAAGA 895
||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 839 ATGGAAACTGGTGTTGTGCCGGAGTCAACAGCATGTGTCACAACAGCTTCACACCCAAGA 898
Query 896 ACGCCGAAAAAGAC-GACAGACCAACTACCTGACCCTCCAATTCAGATGATAAC-----C 949
||||| ||| ||| | ||| |||| |||||||||| ||| ||||||||||| |
Sbjct 899 ACGCCCAAAGGGACAGT-AGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAAC 957
Query 950 -CAACTTAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGAC 1008
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 ACAACTCAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAGGAAGAC 1017
Query 1009 AAGGAAATTTGAGAAGACAATAAGGTATGCTTCAAGGAAGGCATATGCAGAGATAAGACC 1068
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 AAGGAAATTTGAGAAGACAATAAGGTATGCTTCGAGGAAGGCATATGCAGAGATAAGACC 1077
Query 1069 GCGGGTCAATGGCCGGTTCGCAAAGAGGAGAGAAATCGAAGCCGAGGACCAAGTGTTCAA 1128
||||||||||||||||||||||||||| ||| || ||||||||||||| |||| ||||||
Sbjct 1078 GCGGGTCAATGGCCGGTTCGCAAAGAG-AGA-AA-TCGAAGCCGAGGAGCAAGGGTTCAA 1134
Query 1129 CACAATGCTGATGTACGACACAGGATATGGCATTGTTCCTTCATGCTGATACTCCTATGG 1188
||| ||||| |||||| ||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 1135 CACGATGCTAATGTACAACACAGGATATGGGATTGTTCCTTCATTCTGATACTCCTGTGG 1194
Query 1189 CAAAAATAAAGACTAGATTGCAAGCTGTAAATTACTTTTTAGTTTGAGATTCTGTTAGGT 1248
|||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1195 CAAAAAGAAAAACTAGATTGCAAGCTGTAAATTACTTTT-AGTTTGAGATTATGTTAGGT 1253
Query 1249 TTGGTGAAATTCGTAGCTTCAATGAT-TATTACTACTGTTATGCAAATGGGTCTATAGTT 1307
|||||||||||| ||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct 1254 TTGGTGAAATTCTTAGCTTCAA-GAAGTATTACTACTGTTGTGCAAATGGGTTTGTAGTT 1312
Query 1308 TTGGCTAATTAATACTATAGTATTCCTCTTTC 1339
|||||||||||| |||||||||||| ||||||
Sbjct 1313 TTGGCTAATTAAAACTATAGTATTCTTCTTTC 1344
> AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176091-5177897
REVERSE LENGTH=1698
Length=1698
Score = 693 bits (375), Expect = 0.0
Identities = 921/1172 (79%), Gaps = 87/1172 (7%)
Strand=Plus/Plus
Query 97 AGAGAACAACAGGGCACGAGCCTGTGACACATGCCGGTCAAACGCCTGCACCGTGTACTG 156
||||| ||| |||||| ||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 436 AGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCCGCCTGCACCGTGTACTG 495
Query 157 CCATGCGGATTCTGCCTACTTGTGCAT-GAGCTGTGATGCTCAAGTTCACT-CTGCCAAT 214
|| || |||||||||||||||||| | || ||||||||||||||||| | ||||||||
Sbjct 496 CCGGGCTGATTCTGCCTACTTGTGC-TCCAGTTGTGATGCTCAAGTTCA-TGCTGCCAAT 553
Query 215 CGTGTTGCTTCCCGCCATAAACGGGTTCGGGTCTG-CGAGTCATGTGAGCGTGCTCCGGC 273
||| |||||||||||||| |||| ||||| ||||| | | ||||||||||| || |||||
Sbjct 554 CGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTC-AATCATGTGAGCGAGCCCCGGC 612
Query 274 TGCTTTTTTGTGTGAGGCAGATGATGCATCTCTATGCACAGCCTGTGATTCAGAGGTTCA 333
||| ||||| || ||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 613 TGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGTGATTCAGAGATTCA 672
Query 334 TTCTGCAAACCCACTTTCTAGACGCCATCAGCGAGTTCCAATCCTGCCAATTTCTGGA-A 392
||| |||||||||||| ||||||||||||| ||||||||||| ||||| |||||| ||
Sbjct 673 TTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTGCCCATTTCT-GAGT 731
Query 393 ACTCTTTCAGCTCCATGGCCATTCACCA-CCAAAGCGAGACAACAATGACCGATCCAGAG 451
|||||| ||| |||| ||||| | |||| | | | ||||||||| |||| |||||||||
Sbjct 732 ACTCTTACAGTTCCACGGCCACTAACCATTC-ATGTGAGACAACAGTGACAGATCCAGAG 790
Query 452 AAGAGACTGGTG-GTGGATCAAGAGAAAGGTGAAGAAGGTGATGAGGATGCCAAG--GAG 508
|| ||||| ||| ||| || | || || |||| | | ||||| |||| ||| |||
Sbjct 791 AACAGACTTGTGCTTGG-TC-A-AG-AA---GAAG-A-G-GATGAAGATG--AAGCAGAG 838
Query 509 GTGGCTTCGTGGCTGTTCCCTAACTCAGACAAAAATA-TCAATAACCAGAACAATGGGTT 567
| |||||| ||| |||| ||||| |||| ||||| | | ||| | |||||||| ||
Sbjct 839 GCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGT-GGTAA-C--AACAATGGCTT 894
Query 568 ATTGTTTAGTGATGAGTATCTAG-ACCTTGTGGATTACAACTCAAGTATGGACT-A-CAA 624
| | || | ||||||| ||| | ||||||| ||||| | || || | || | | | |
Sbjct 895 CTCGATTGGGGATGAGTTTCT-GAACCTTGTTGATTATAGTTCGAG--T-GA-TAAGC-A 948
Query 625 ATTCACAGGTCAATACC-ATCAACACCAGCAAAACTGCGGCGTACCACAGACGAGCTACG 683
|||||||| ||||| || |||| | || | | ||||| |||||| |||| |||||| |
Sbjct 949 ATTCACAGATCAAT-CCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATG 1007
Query 684 GGGGAGATGGAGTTGTTCCGCTTCAACTTGAAGAATCAAGGGGCCACCAGTGCCATA-AC 742
||| ||||||||||||||| |||||| |||||| ||||| ||| || || ||| | |
Sbjct 1008 GGGAAGATGGAGTTGTTCCACTTCAAATTGAAGTATCAAAGGG-CA--TGTACCA-AGAG 1063
Query 743 CAACAGAATTTTCAGTTCGA-TATCAAATATGACTCCTCAGGAAGTCACTAC-AA-CGAC 799
|||||||| |||||| | || |||||| | || ||||| || || | || | || | |
Sbjct 1064 CAACAGAACTTTCAGCT-GAGTATCAACTGTGGCTCCT-GGGGAG-CTCTTCGAAGCTCC 1120
Query 800 AACT-GTTCCCTTAACCATAACGTATACAT-TTT-ATCTATGGAAACT-GGCGTTGTGCC 855
|| | ||||||| | |||| || | || ||| |||||||| | || || ||||||||
Sbjct 1121 AA-TGGTTCCCTCAGTCATATGGT-GA-ATGTTTCATCTATGG-ACCTGGGAGTTGTGCC 1176
Query 856 GGAGTCAACAGC-ACGTGACAAAACAGCT-TCACACCCAAGAACGCCGAAAAAGACGACA 913
|||||||||| | | ||||| ||||| | ||| |||||||| |||| ||| | |||
Sbjct 1177 GGAGTCAACAACGA-GTGACGCAACAG-TATCAAACCCAAGATCGCCCAAAGCGGTAACA 1234
Query 914 GACCAACTACCTGACCCTCCAATTCAGATGATAACCCAACTTAGTCCAATGGACAGAGAA 973
||||||| |||| |||||||| ||||||| || ||||||| ||||||||||
Sbjct 1235 GACCAACCACCTTACCCTCCAGCTCAGATG---------CTCAGTCCAAGGGACAGAGAA 1285
Query 974 GCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGAGAAGACAATAAGG 1033
|| || |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1286 GCTAGAGTCCTGAGATACAGAGAGAAGAAGAAGATGAGGAAATTTGAGAAGACGATAAGA 1345
Query 1034 TATGCTTCAAGGAAGGCATATGCAGAGATAAGACCGCGGGTCAATGGCCGGTTCGCAAAG 1093
|||||||||||||| || |||||||||| |||||| ||| |||| |||||||| ||||||
Sbjct 1346 TATGCTTCAAGGAAAGCGTATGCAGAGAAAAGACCACGGATCAAGGGCCGGTTTGCAAAG 1405
Query 1094 AGGAGAGAAATCGAAGCCGAGG-A--CCAAG-TGTTCAACACAATGCTGATGTACGACAC 1149
| || ||| |||| | |||| | ||||| | ||| ||||||| | | | |||||
Sbjct 1406 AAGAAAGATGTCGATGAAGAGGCAAACCAAGCT-TTCTCCACAATGATAACATTTGACAC 1464
Query 1150 AGGATATGGCATTGTTCCTTCATGCTGATACTCCTATGGCAAAAATAAAGACTAGATTGC 1209
|||||||| |||||||| |||| ||||| || ||||||||||| || |||| | |
Sbjct 1465 CGGATATGGAATTGTTCCATCATTCTGATGCTGCTATGGCAAAACTA--GACT-G----C 1517
Query 1210 AAGCT-GTAAATTACTTTTTAGTTTGAGATTC 1240
| ||| ||||||||||| | |||||| ||||
Sbjct 1518 ATGCTTGTAAATTACTTCTG-GTTTGAAATTC 1548
> AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487236-488693
REVERSE LENGTH=1315
Length=1315
Score = 431 bits (233), Expect = 9e-120
Identities = 605/775 (78%), Gaps = 63/775 (8%)
Strand=Plus/Plus
Query 491 GATGAGGATG-CCAAGGAGGTGGCTTCGTGGCTGTTCCCTAACT-CAGACAAAAATATCA 548
|||||||||| | | ||||| ||||||||| | ||||||| | ||| ||||| |||
Sbjct 433 GATGAGGATGATCGA-GAGGTTGCTTCGTGGTTACTCCCTAA-TCCAGGGAAAAACATCG 490
Query 549 ATAACCAGAACAATGGGTTATTGTTTAGTGATGAGTATCTAGACCTTGTGGATTACAACT 608
||| ||||| |||||||| |||||| ||| |||||| || || ||||||||||||| ||
Sbjct 491 GTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGCT 550
Query 609 CAAGTATGGACTACAAATTCACAGGTCAATACCATCAACACCAGCAAAACTGCGGCGTAC 668
| || |||||| || |||| | | | | || | | ||| | ||| | | ||
Sbjct 551 CCAGCATGGACAACCAATT--C--G---A-A-GAT--A-ATCAG-TACACT-C-AC-TA- 593
Query 669 CACAGACGAGCTACGGGGGAGATGGAGTTGTTCCGCTTCAACTTGAAGAATCAAGGGGCC 728
| |||| ||||| || |||||||||||||| ||||||||| |||||||||||| | |
Sbjct 594 C-CAGAGGAGCTTTGGAGGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTC 652
Query 729 ACCAGTGC--CATAA-CCAACAGAATTTTCAGTTCGATATCAAATAT-GA--CTCCTCAG 782
||| ||| || || |||||| || |||||||| | |||||| ||| || ||||||||
Sbjct 653 ACC--TGCAACA-AAGCCAACAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAG 709
Query 783 GAAG-TCACTACAACGACAACT-GTT-----CCCTTAACCATAACGTATACATTTTATCT 835
| || |||||||||| |||||| || ||| ||||||| || || | ||| |||
Sbjct 710 G-AGCTCACTACAACAACAACTCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCA 768
Query 836 ATGGA-AACTGGCGTTGTGCCGGAGTCAACAGCACGTGACAAAACAGCTTC-ACACCCAA 893
||||| | | | |||||||| |||||||| ||| |||||| ||||| | | ||||||||
Sbjct 769 ATGGACATC-AGTGTTGTGCCAGAGTCAACTGCAAGTGACATAACAG-TCCAACACCCAA 826
Query 894 GAACGCCGAAAAAGACGACAGACCAACTACCTGACCCTCCAATTCAGATGATAAC-CCAA 952
|||| | ||| |||||| |||||||||| ||| ||||| | |||| || | | ||
Sbjct 827 GAACTACTAAAGAGACGATAGACCAACTATCTGGTCCTCCTACTCAGGTGGT-GCAACAG 885
Query 953 CTTAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGG 1012
|||| ||||||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 886 CTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGG 945
Query 1013 AAATTTGAGAAGACAATAAGGTATGCTTCAAGGAAGGCATATGCAGAGATAAGACCGCGG 1072
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 946 AAATTTGACAAGACAATAAGATATGCTTCAAGAAAGGCATATGCAGAGATAAGACCACGG 1005
Query 1073 GTCAATGGCCGGTTCGCAAAGAGGAGAGAAA-TCGAAGCCGAGGACC-AAG---TGTTCA 1127
|||| ||| | ||||||||||||| ||||| | ||||| |||| | ||| | |||
Sbjct 1006 ATCAAGGGCAGATTCGCAAAGAGGATAGAAACT-GAAGCTGAGG-CTGAAGAAATCTTCT 1063
Query 1128 ACA-CAAT-GCTGATGTAC-GACACAGGATATGGCATTGTTCCTTCATGCTGATACTCCT 1184
|| || | ||| |||| | || || |||||||| ||||| ||||| | || | ||||||
Sbjct 1064 -CAACA-TCGCTAATGT-CTGAGACTGGATATGGAATTGTCCCTTCCTTCTAA-ACTCCT 1119
Query 1185 ATGGCAAAAATAAAGACTAGATTGCAAGCTGTAAATTACTTTTTAGTTTGAGATT 1239
||||| || ||| |||||||||||| |||||||||||||| | |||||| ||||
Sbjct 1120 ATGGCGAAGATA--GACTAGATTGCATGCTGTAAATTACTTCT-AGTTTG-GATT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5