BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488432 Length=1592 Score E Sequences producing significant alignments: (Bits) Value AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:51... 2095 0.0 AT5G15845.1 | Symbols: | other RNA | chr5:5173185-5177889 FORW... 1500 0.0 > AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176091-5177897 REVERSE LENGTH=1698 Length=1698 Score = 2095 bits (1134), Expect = 0.0 Identities = 1493/1652 (90%), Gaps = 82/1652 (5%) Strand=Plus/Plus Query 13 AAA-AGTT-GCAACTTGCACGTTCCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 70 ||| |||| | || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 5 AAATAGTTAG-AAGTTGCACGTTTCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 63 Query 71 GATTACATAGGAAGGGGTGTTTACACTTA-T-A-G-AG--A-A-AG---TAGT-GTAACT 118 |||||||||||||| |||||||||||||| | | | || | | || ||| |||||| Sbjct 64 GATTACATAGGAAGAGGTGTTTACACTTATTGAGGAAGAAAGAGAGAAAAAGTAGTAACT 123 Query 119 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAG---TTTT-GTT-TTTCACATTTTC 173 |||||||||||||||||||||||||||||||||||| |||| || ||||||| |||| Sbjct 124 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAGTTTTTTTCTTTCTTTCACA-TTTC 182 Query 174 CTGATGGTTGATGATTCCAAAAGCTGTAAGCTTCTCTGCACTGGACCCCCTTCTCAGAAA 233 || |||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| Sbjct 183 GTGCTGGTTGATGATTCC-AAAGCTGTAAGCATCTCTGCACTGGA-CCCCTTCTCAAAAA 240 Query 234 CTCAGCCAGCCACAAGGTGATCAAACGACTTTTCAAAGCCACAAACTTCTCGCCACGTGT 293 |||||||||||||||| |||||| | || ||||| |||||||||||||||||||||| Sbjct 241 CTCAGCCAGCCACAAGATGATCACTCAAC--ATCAAACCCACAAACTTCTCGCCACGTGT 298 Query 294 CCAGATCTCAGGATTCTA---------TCC--TT-C---C-ACAACTAATATAACCTTCT 337 |||| ||||| |||||| ||| || | | |||||||||||| |||||| Sbjct 299 CCAGCCCTCAGAATTCTATCCTTCCTTTCCATTTCCATTCAACAACTAATATAGCCTTCT 358 Query 338 TAGTTCCCTGCTACCTTTAGATACAATCTCACTCACCATCAAACAACTACAACATCTG-G 396 |||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||| | Sbjct 359 TAGTCCCCTGCTGCCTTTACATACGATCTCACTCACCATCAAACAACTACAACATCTGCG 418 Query 397 GTTAGTATGATGAAAGTAGAGAGTAACTGGGGACAAGCCTGTGATACATGCCGATCAGCC 456 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 419 GTTAGTATGTTGAAAGTAGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCC 478 Query 457 GCCTGTACCGTGTACTGCCGGGCTGATTCTGCCTACCTGTGCACCAGCTGTGATGCTCAA 516 ||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct 479 GCCTGCACCGTGTACTGCCGGGCTGATTCTGCCTACTTGTGCTCCAGTTGTGATGCTCAA 538 Query 517 GTTCATGCTGCCAATCGTCTTGCTTCTCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 576 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 539 GTTCATGCTGCCAATCGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 598 Query 577 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 658 Query 637 GATTCAGAGATTCATTCAGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 696 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GATTCAGAGATTCATTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 718 Query 697 CCCATTTCTGAAAACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 756 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CCCATTTCTGAGTACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 778 Query 757 ACAGATCCAGAGAACAGACTGGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 816 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACAGATCCAGAGAACAGACTTGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 838 Query 817 GCGGCTTCGTGGTTGTTGCCTAATTCAGGGAAAAACAATGGTAACAACAATGGGTTCTCT 876 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 839 GCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGTGGTAACAACAATGGCTTCTCG 898 Query 877 ATTGGTGACGAGTTTCTGGACCTTGTTGATTACAGTTCGAGTGATAAGCAATTCACGGAT 936 ||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| ||| Sbjct 899 ATTGGGGATGAGTTTCTGAACCTTGTTGATTATAGTTCGAGTGATAAGCAATTCACAGAT 958 Query 937 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGAGGA---TGGA 993 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 959 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGGGGAAGATGGA 1018 Query 994 GTCGTACCACTTCAAGTTGAAGTATCAAAGGGTCACATGCACCACGAGCAACAGAACTTT 1053 || || ||||||||| |||||||||||||||| || || |||| ||||||||||||||| Sbjct 1019 GTTGTTCCACTTCAAATTGAAGTATCAAAGGG-CA--TGTACCAAGAGCAACAGAACTTT 1075 Query 1054 CAGTTGAGTATCACCTGTGGCTCCCCAAGAGCTCATCGAAGCTCCAATGGTTCCCTAAGT 1113 ||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| ||| Sbjct 1076 CAGCTGAGTATCAACTGTGGCTCCTGGGGAGCTCTTCGAAGCTCCAATGGTTCCCTCAGT 1135 Query 1114 CATATGGT-ACATGTTTCATCTATTGACCTGGGAGTTGTGCC--AG--A-----G--T-- 1159 |||||||| | ||||||||||||| ||||||||||||||||| || | | | Sbjct 1136 CATATGGTGA-ATGTTTCATCTATGGACCTGGGAGTTGTGCCGGAGTCAACAACGAGTGA 1194 Query 1160 C--AACA--A--A--CCCAAGATCGCCCAAAGCGGTAACAGACCAACTACCTGACCCTCC 1211 | |||| | | |||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1195 CGCAACAGTATCAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACCACCTTACCCTCC 1254 Query 1212 AGCTCAGATGCTCAGTCCaagagacagagaggctagagtcctgagatacagagagaagaa 1271 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1255 AGCTCAGATGCTCAGTCCAAGGGACAGAGAAGCTAGAGTCCTGAGATACAGAGAGAAGAA 1314 Query 1272 gaagatgagaaaatttgagaagacgataagatATGCTTCAAGGAAAGCGTATGCAGAGAA 1331 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 GAAGATGAGGAAATTTGAGAAGACGATAAGATATGCTTCAAGGAAAGCGTATGCAGAGAA 1374 Query 1332 AAGACCACGGATCAAGGGGCGGTTTGCAAAGAGGAACGAAGTTGATGCAGAGGCAAACGA 1391 |||||||||||||||||| ||||||||||||| ||| || || |||| |||||||||| | Sbjct 1375 AAGACCACGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCAAACCA 1434 Query 1392 AGCTTTCTCCACAATCATAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1451 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1435 AGCTTTCTCCACAATGATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1494 Query 1452 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1554 Query 1512 GTTGTTACCACGGTT--ATGCATATAGGC-CTGTAGTTT--T-GT----C-TAACTAGTA 1560 ||| ||||||||||| ||||||||||| ||||||||| | || | ||||||||| Sbjct 1555 GTTATTACCACGGTTTTATGCATATAGGGTCTGTAGTTTACTAGTTTTGCCTAACTAGTA 1614 Query 1561 CGAGTTAATTAGATATATATTCATATTTAGCT 1592 ||||||||||||||||| | ||||| |||||| Sbjct 1615 CGAGTTAATTAGATATACACTCATACTTAGCT 1646 > AT5G15845.1 | Symbols: | other RNA | chr5:5173185-5177889 FORWARD LENGTH=2248 Length=2248 Score = 1500 bits (812), Expect = 0.0 Identities = 1046/1151 (91%), Gaps = 48/1151 (4%) Strand=Plus/Minus Query 25 TTGCACGTTCCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAAGATTACATAGGAAG 84 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2239 TTGCACGTTTCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAAGATTACATAGGAAG 2180 Query 85 GGGTGTTTACACTTA-T-A-G-AG--A-A-AG---TAGT-GTAACTATTGGTGCCATTGC 132 |||||||||||||| | | | || | | || ||| |||||||||||||||||||| Sbjct 2179 AGGTGTTTACACTTATTGAGGAAGAAAGAGAGAAAAAGTAGTAACTATTGGTGCCATTGC 2120 Query 133 AAAGATATAAGAAGACAATTAG---TTTT-GTT-TTTCACATTTTCCTGATGGTTGATGA 187 |||||||||||||||||||||| |||| || ||||||| |||| || |||||||||| Sbjct 2119 AAAGATATAAGAAGACAATTAGTTTTTTTCTTTCTTTCACA-TTTCGTGCTGGTTGATGA 2061 Query 188 TTCCAAAAGCTGTAAGCTTCTCTGCACTGGACCCCCTTCTCAGAAACTCAGCCAGCCACA 247 |||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| Sbjct 2060 TTCC-AAAGCTGTAAGCATCTCTGCACTGGA-CCCCTTCTCAAAAACTCAGCCAGCCACA 2003 Query 248 AGGTGATCAAACGACTTTTCAAAGCCACAAACTTCTCGCCACGTGTCCAGATCTCAGGAT 307 || |||||| | || ||||| |||||||||||||||||||||||||| ||||| || Sbjct 2002 AGATGATCACTCAAC--ATCAAACCCACAAACTTCTCGCCACGTGTCCAGCCCTCAGAAT 1945 Query 308 TCTA---------TCC--TT-C---C-ACAACTAATATAACCTTCTTAGTTCCCTGCTAC 351 |||| ||| || | | |||||||||||| |||||||||| ||||||| | Sbjct 1944 TCTATCCTTCCTTTCCATTTCCATTCAACAACTAATATAGCCTTCTTAGTCCCCTGCTGC 1885 Query 352 CTTTAGATACAATCTCACTCACCATCAAACAACTACAACATCTG-GGTTAGTATGATGAA 410 ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1884 CTTTACATACGATCTCACTCACCATCAAACAACTACAACATCTGCGGTTAGTATGTTGAA 1825 Query 411 AGTAGAGAGTAACTGGGGACAAGCCTGTGATACATGCCGATCAGCCGCCTGTACCGTGTA 470 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1824 AGTAGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCCGCCTGCACCGTGTA 1765 Query 471 CTGCCGGGCTGATTCTGCCTACCTGTGCACCAGCTGTGATGCTCAAGTTCATGCTGCCAA 530 |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| Sbjct 1764 CTGCCGGGCTGATTCTGCCTACTTGTGCTCCAGTTGTGATGCTCAAGTTCATGCTGCCAA 1705 Query 531 TCGTCTTGCTTCTCGCCATGAACGTGTTCGAGTCTGTCAATCATGTGAGCGAGCCCCGGC 590 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1704 TCGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTCAATCATGTGAGCGAGCCCCGGC 1645 Query 591 TGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGTGATTCAGAGATTCA 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1644 TGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGTGATTCAGAGATTCA 1585 Query 651 TTCAGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTGCCCATTTCTGAAAA 710 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1584 TTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTGCCCATTTCTGAGTA 1525 Query 711 CTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTGACAGATCCAGAGAA 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 CTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTGACAGATCCAGAGAA 1465 Query 771 CAGACTGGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAGGCGGCTTCGTGGTT 830 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1464 CAGACTTGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAGGCGGCTTCATGGTT 1405 Query 831 GTTGCCTAATTCAGGGAAAAACAATGGTAACAACAATGGGTTCTCTATTGGTGACGAGTT 890 ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| || ||||| Sbjct 1404 GTTGCCTAATTCAGGGAAAAACAGTGGTAACAACAATGGCTTCTCGATTGGGGATGAGTT 1345 Query 891 TCTGGACCTTGTTGATTACAGTTCGAGTGATAAGCAATTCACGGATCAATCCAATCAGTA 950 |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1344 TCTGAACCTTGTTGATTATAGTTCGAGTGATAAGCAATTCACAGATCAATCCAATCAGTA 1285 Query 951 TCAACTAGACTGCAACGTACCTCAGAGGAGCTATGAGGA---TGGAGTCGTACCACTTCA 1007 ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||| Sbjct 1284 TCAACTAGACTGCAACGTACCTCAGAGGAGCTATGGGGAAGATGGAGTTGTTCCACTTCA 1225 Query 1008 AGTTGAAGTATCAAAGGGTCACATGCACCACGAGCAACAGAACTTTCAGTTGAGTATCAC 1067 | |||||||||||||||| || || |||| |||||||||||||||||| ||||||||| Sbjct 1224 AATTGAAGTATCAAAGGG-CA--TGTACCAAGAGCAACAGAACTTTCAGCTGAGTATCAA 1168 Query 1068 CTGTGGCTCCCCAAGAGCTCATCGAAGCTCCAATGGTTCCCTAAGTCATATGGTACATG- 1126 |||||||||| |||||| ||||||||||||||||||||| |||||||||||| | | Sbjct 1167 CTGTGGCTCCTGGGGAGCTCTTCGAAGCTCCAATGGTTCCCTCAGTCATATGGTA-A-GC 1110 Query 1127 TTTCATCTATT 1137 |||||| |||| Sbjct 1109 TTTCATATATT 1099 Score = 263 bits (142), Expect = 4e-69 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1339 CGGATCAAGGGGCGGTTTGCAAAGAGGAACGAAGTTGATGCAGAGGCAAACGAAGCTTTC 1398 ||||||||||| ||||||||||||| ||| || || |||| |||||||||| |||||||| Sbjct 854 CGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCAAACCAAGCTTTC 795 Query 1399 TCCACAATCATAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTAT 1458 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 TCCACAATGATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTAT 735 Query 1459 GGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCT 1507 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 GGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCT 686 Score = 143 bits (77), Expect = 6e-33 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1163 CAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACTACCTGACCCTCCAGCTCAGATGC 1222 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 942 CAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACCACCTTACCCTCCAGCTCAGATGC 883 Query 1223 TCAGTCCaagagacagagaggctagagtc 1251 |||||||||| |||||||| ||||||||| Sbjct 882 TCAGTCCAAGGGACAGAGAAGCTAGAGTC 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78614053470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5