BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488445
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15948.1 | Symbols: CPuORF10 | conserved peptide upstream op... 1755 0.0
AT5G15950.1 | Symbols: | Adenosylmethionine decarboxylase fami... 1755 0.0
AT3G02468.1 | Symbols: CPuORF9 | conserved peptide upstream ope... 259 6e-68
AT3G02470.1 | Symbols: SAMDC | S-adenosylmethionine decarboxyla... 259 6e-68
> AT5G15948.1 | Symbols: CPuORF10 | conserved peptide upstream
open reading frame 10 | chr5:5205871-5208036 FORWARD LENGTH=1802
Length=1802
Score = 1755 bits (950), Expect = 0.0
Identities = 1142/1231 (93%), Gaps = 28/1231 (2%)
Strand=Plus/Plus
Query 426 GATGACCATGTCTGCTATTGGCTTCGAAGGCTACGAGAAGCGTCTTGAAGTTACTTTCTT 485
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 471 GATGGCCATGTCTGCTATTGGCTTCGAAGGTTACGAGAAGCGGCTTGAAGTTACTTTCTT 530
Query 486 TGAGCCTGGTCTCTTTCTTGACACTCAAGGTAAAGGTCTACGTGCCTTGA-CCAAATCTC 544
|||||||||||||||||||||||||||||| ||||| ||||||| ||| | | || ||||
Sbjct 531 TGAGCCTGGTCTCTTTCTTGACACTCAAGGAAAAGGGCTACGTG-CTTTAGCTAAGTCTC 589
Query 545 AGATCGATGAGATTCTTCAACCAGCTGAGTGCACTATCGTTTCATCTCTCTCGAACGATC 604
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 590 AGATCGATGAGATTCTTCAGCCAGCTGAGTGCACTATCGTCTCATCTCTCTCGAACGATC 649
Query 605 AGCTCGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCTTACAAGATTGTCA 664
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 650 AGCTTGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCGTACAAGATCGTCA 709
Query 665 TCAAAACTTGCGGGACTACTAAGCTCCTCCTCTCTATTGAGCCACTCTTGAGGTTAGCTA 724
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 710 TCAAGACTTGCGGTACTACTAAGCTCCTCCTCTCTATTGAGCCTCTCTTGAGGTTAGCCG 769
Query 725 GTGAGCTTTCTCTTGACGTCAAGGCTGTGAGGTACACTCGTGGAAGCTTCCTCTGTCCTG 784
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 770 GTGAGCTTTCTCTTGACGTTAAGGCTGTGAGGTACACTCGTGGAAGTTTCCTCTGTCCTG 829
Query 785 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTGCTTGATGGTCACT 844
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 830 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTTCTTGATGGTCACT 889
Query 845 TTGCTAAG-TTGGGTTTGAGCAGTGTTGCGTACTTGATGGGCAATGACGATGAAACCAAG 903
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 890 TTGCTAAGCTT-GGTTTAAGCAGTGTTGCCTACTTGATGGGCAATGACGATGAAACCAAG 948
Query 904 AAATGGCATGTTTACTCTGCTTCTTCTGATaacaacaacaacaacaacaaTGTCTACACT 963
|||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 949 AAATGGCATGTTTACTCTGCTTCTTCTGCCAACAGCAACAACAAGAACAATGTCTACACG 1008
Query 964 CTCGAGATGTGTATGACTGGTCTGGACAAAGACAAGGCATCTGTCTTCTTCAAGAACGAG 1023
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1009 CTTGAGATGTGTATGACTGGTCTAGACAAAGACAAGGCATCTGTCTTCTACAAGAACGAG 1068
Query 1024 TCAAGCTCAGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTTCCTCAATCC 1083
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1069 TCAAGCTCTGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTGCCTCAATCC 1128
Query 1084 CAAATCTGTGACTTTGAGTTTGAGCCATGTGGCTACTCAATGAACAGCATCGAAGGTGAC 1143
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1129 CAAATCTGTGACTTTGAGTTTGAGCCCTGTGGCTACTCAATGAACAGCATCGAAGGCGAC 1188
Query 1144 GCAATCTCCACCATCCATGTGACTCCAGAAGATGGTTTCAGCTACGCTAGCTTTGATGCA 1203
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1189 GCAATCTCTACCATCCATGTAACTCCAGAGGATGGTTTCAGCTACGCTAGCTTTGAAGCA 1248
Query 1204 GTGGGATACGATTTCACAACCATGGACTTGAGCCATCTGGTCTCAAAGGTACTAACTTGC 1263
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1249 GTGGGATATGATTTCACAACCATGGACTTGAGCCATCTTGTCTCAAAGGTACTAACTTGC 1308
Query 1264 TTCGAGCCAAAGCAATTCTCTGTAGCTGTCCACTCTAGCGTCGCACAAAATG-GGTATC- 1321
||| | ||||| ||||||||||||||||||||||| | ||| ||||| || | | || |
Sbjct 1309 TTCAAACCAAAACAATTCTCTGTAGCTGTCCACTCGACCGTGGCACAGAA-GAGCTA-CG 1366
Query 1322 ACTCTGGTCTATGTGTTGACCTAGACGATTACGAATGCAGAGAGACAACAATGGAGTCTC 1381
|||||||||| | ||| |||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 1367 ACTCTGGTCTCTCTGTGGACCTAGACGATTACGGATGCAAAGAGTCAACAATGGAGTCTC 1426
Query 1382 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTTGGAAAGTATTGTG 1441
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1427 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTAGGAAGGTATTGTG 1486
Query 1442 GTTCTCCGCGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1501
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GTTCTCCGAGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1546
Query 1502 ACGAGAAGGAGGAATAGGGAATCTAAA-GCTCAAGtttttaatttt-gttttctcgaata 1559
|||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 1547 ACGAGAAGGA--A-TAGGGAATCTAAAAGCTCAAGTTTTTAATTTTCGTTTTCTTGAATA 1603
Query 1560 attaatgtgttatggatattttt-t-cttctt-tt-tt-cCCTTAAACCAGTGATTGATT 1614
|| || |||||||||||||| | |||||| || || |||||||||||||| ||| |
Sbjct 1604 AT----GTCTTATGGATATTTTTCTTCTTCTTCTTATTTCCCTTAAACCAGTGTTTG-T- 1657
Query 1615 GTCTCTGTGGTCTATGTGAATTCGGATGATC 1645
|||| | | |||||||||||||||||||||
Sbjct 1658 GTCT--G-G-TCTATGTGAATTCGGATGATC 1684
Score = 525 bits (284), Expect = 5e-148
Identities = 388/434 (89%), Gaps = 23/434 (5%)
Strand=Plus/Plus
Query 1 AATATCTCAAACTCGTTTCCTCTCTCTTTTCATCATTACCAAATCATAAGCGGCTCTCTT 60
|||||| |||||||| || | |||||||||||||||| ||||||||||||||||||
Sbjct 1 AATATCACAAACTCG-TT--T-GCTCTTTTCATCATTACTAAATCATAAGCGGCTCTC-- 54
Query 61 AA--TATTTAGGGTTTCGAGTTTTCTCAA--T-C-ACCTGATTAAGCAGGTTTTCGTTCG 114
|| | ||||||||||||||||||||||| | | |||||||| | | ||| |||
Sbjct 55 AAGTTCTTTAGGGTTTCGAGTTTTCTCAATCTCCTACCTGATT-A--A-GTTCAGGTTAA 110
Query 115 TTTCATATCTTGGATCAATTACAAGAGAATTATAAACTCCGGATCGTGATCAATATTCCT 174
|||| |||||||||||||| ||||||||||||| |||||||||| || ||||||||||||
Sbjct 111 TTTCTTATCTTGGATCAATAACAAGAGAATTAT-AACTCCGGATTGTAATCAATATTCCT 169
Query 175 TTACATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCAATAAGAAGTCAAG 234
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 170 CTACATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGCTGGTAATAAGAAGTCAAG 229
Query 235 CA-C-A-AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCC 291
|| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CAGCAATAGTTCCTTATGTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCC 289
Query 292 TTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCGCTAAGAGGCCTTC 351
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 290 TTTCGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCCAACTGCGCTAAGAGGCCTTC 349
Query 352 CTGAGTACCAGCCAATTTCTTCCATAGCTTTTCAATTACAACAATCTCCTTTTCATTTCA 411
|||||||| ||||| || | |||||||||||||||||||||||||||||||||| | ||
Sbjct 350 CTGAGTACTAGCCAGTTCCCTCCATAGCTTTTCAATTACAACAATCTCCTTTTC-T--CA 406
Query 412 AAGCTCTGGTTCCC 425
||||||||||||||
Sbjct 407 AAGCTCTGGTTCCC 420
> AT5G15950.1 | Symbols: | Adenosylmethionine decarboxylase family
protein | chr5:5205869-5207987 FORWARD LENGTH=1750
Length=1750
Score = 1755 bits (950), Expect = 0.0
Identities = 1142/1231 (93%), Gaps = 28/1231 (2%)
Strand=Plus/Plus
Query 426 GATGACCATGTCTGCTATTGGCTTCGAAGGCTACGAGAAGCGTCTTGAAGTTACTTTCTT 485
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 468 GATGGCCATGTCTGCTATTGGCTTCGAAGGTTACGAGAAGCGGCTTGAAGTTACTTTCTT 527
Query 486 TGAGCCTGGTCTCTTTCTTGACACTCAAGGTAAAGGTCTACGTGCCTTGA-CCAAATCTC 544
|||||||||||||||||||||||||||||| ||||| ||||||| ||| | | || ||||
Sbjct 528 TGAGCCTGGTCTCTTTCTTGACACTCAAGGAAAAGGGCTACGTG-CTTTAGCTAAGTCTC 586
Query 545 AGATCGATGAGATTCTTCAACCAGCTGAGTGCACTATCGTTTCATCTCTCTCGAACGATC 604
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 587 AGATCGATGAGATTCTTCAGCCAGCTGAGTGCACTATCGTCTCATCTCTCTCGAACGATC 646
Query 605 AGCTCGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCTTACAAGATTGTCA 664
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 647 AGCTTGACTCTTATGTTCTCTCTGAGTCCAGTCTCTTTATCTTCCCGTACAAGATCGTCA 706
Query 665 TCAAAACTTGCGGGACTACTAAGCTCCTCCTCTCTATTGAGCCACTCTTGAGGTTAGCTA 724
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 707 TCAAGACTTGCGGTACTACTAAGCTCCTCCTCTCTATTGAGCCTCTCTTGAGGTTAGCCG 766
Query 725 GTGAGCTTTCTCTTGACGTCAAGGCTGTGAGGTACACTCGTGGAAGCTTCCTCTGTCCTG 784
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 767 GTGAGCTTTCTCTTGACGTTAAGGCTGTGAGGTACACTCGTGGAAGTTTCCTCTGTCCTG 826
Query 785 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTGCTTGATGGTCACT 844
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 827 GAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTTCTTGATGGTCACT 886
Query 845 TTGCTAAG-TTGGGTTTGAGCAGTGTTGCGTACTTGATGGGCAATGACGATGAAACCAAG 903
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 887 TTGCTAAGCTT-GGTTTAAGCAGTGTTGCCTACTTGATGGGCAATGACGATGAAACCAAG 945
Query 904 AAATGGCATGTTTACTCTGCTTCTTCTGATaacaacaacaacaacaacaaTGTCTACACT 963
|||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 946 AAATGGCATGTTTACTCTGCTTCTTCTGCCAACAGCAACAACAAGAACAATGTCTACACG 1005
Query 964 CTCGAGATGTGTATGACTGGTCTGGACAAAGACAAGGCATCTGTCTTCTTCAAGAACGAG 1023
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1006 CTTGAGATGTGTATGACTGGTCTAGACAAAGACAAGGCATCTGTCTTCTACAAGAACGAG 1065
Query 1024 TCAAGCTCAGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTTCCTCAATCC 1083
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1066 TCAAGCTCTGCTGGTTCTATGACTGATAACTCTGGCATCAGAAAGATACTGCCTCAATCC 1125
Query 1084 CAAATCTGTGACTTTGAGTTTGAGCCATGTGGCTACTCAATGAACAGCATCGAAGGTGAC 1143
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1126 CAAATCTGTGACTTTGAGTTTGAGCCCTGTGGCTACTCAATGAACAGCATCGAAGGCGAC 1185
Query 1144 GCAATCTCCACCATCCATGTGACTCCAGAAGATGGTTTCAGCTACGCTAGCTTTGATGCA 1203
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1186 GCAATCTCTACCATCCATGTAACTCCAGAGGATGGTTTCAGCTACGCTAGCTTTGAAGCA 1245
Query 1204 GTGGGATACGATTTCACAACCATGGACTTGAGCCATCTGGTCTCAAAGGTACTAACTTGC 1263
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1246 GTGGGATATGATTTCACAACCATGGACTTGAGCCATCTTGTCTCAAAGGTACTAACTTGC 1305
Query 1264 TTCGAGCCAAAGCAATTCTCTGTAGCTGTCCACTCTAGCGTCGCACAAAATG-GGTATC- 1321
||| | ||||| ||||||||||||||||||||||| | ||| ||||| || | | || |
Sbjct 1306 TTCAAACCAAAACAATTCTCTGTAGCTGTCCACTCGACCGTGGCACAGAA-GAGCTA-CG 1363
Query 1322 ACTCTGGTCTATGTGTTGACCTAGACGATTACGAATGCAGAGAGACAACAATGGAGTCTC 1381
|||||||||| | ||| |||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 1364 ACTCTGGTCTCTCTGTGGACCTAGACGATTACGGATGCAAAGAGTCAACAATGGAGTCTC 1423
Query 1382 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTTGGAAAGTATTGTG 1441
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1424 TAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGGTTTGAGAAGCTAGGAAGGTATTGTG 1483
Query 1442 GTTCTCCGCGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1501
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GTTCTCCGAGATCTACCTTGAAATGTGAGTGGAGCAGCAACAGTAGCTGCAACAGCGAGG 1543
Query 1502 ACGAGAAGGAGGAATAGGGAATCTAAA-GCTCAAGtttttaatttt-gttttctcgaata 1559
|||||||||| | ||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 1544 ACGAGAAGGA--A-TAGGGAATCTAAAAGCTCAAGTTTTTAATTTTCGTTTTCTTGAATA 1600
Query 1560 attaatgtgttatggatattttt-t-cttctt-tt-tt-cCCTTAAACCAGTGATTGATT 1614
|| || |||||||||||||| | |||||| || || |||||||||||||| ||| |
Sbjct 1601 AT----GTCTTATGGATATTTTTCTTCTTCTTCTTATTTCCCTTAAACCAGTGTTTG-T- 1654
Query 1615 GTCTCTGTGGTCTATGTGAATTCGGATGATC 1645
|||| | | |||||||||||||||||||||
Sbjct 1655 GTCT--G-G-TCTATGTGAATTCGGATGATC 1681
Score = 516 bits (279), Expect = 3e-145
Identities = 383/430 (89%), Gaps = 20/430 (5%)
Strand=Plus/Plus
Query 1 AATATCTCAAACTCGTTTCCTCTCTCTTTTCATCATTACCAAATCATAAGCGGCTCTCTT 60
|||||| |||||||| || | |||||||||||||||| ||||||||||||||||||
Sbjct 3 AATATCACAAACTCG-TT--T-GCTCTTTTCATCATTACTAAATCATAAGCGGCTCTC-- 56
Query 61 AA--TATTTAGGGTTTCGAGTTTTCTCAATCACCTGATTAAGCAGGTTTTCGTTCGTTTC 118
|| | ||||||||||||||||||||||||| || | | | | || ||| ||||
Sbjct 57 AAGTTCTTTAGGGTTTCGAGTTTTCTCAATCTCC----T-ACCTGATTAAGGTTAATTTC 111
Query 119 ATATCTTGGATCAATTACAAGAGAATTATAAACTCCGGATCGTGATCAATATTCCTTTAC 178
|||||||||||||| ||||||||||||| |||||||||| || |||||||||||| |||
Sbjct 112 TTATCTTGGATCAATAACAAGAGAATTAT-AACTCCGGATTGTAATCAATATTCCTCTAC 170
Query 179 ATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCAATAAGAAGTCAAGCA-C 237
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 171 ATAAAAAGCGTGAATGAGATTATGATGGAATCGAAAGCTGGTAATAAGAAGTCAAGCAGC 230
Query 238 -A-AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCCTTAC 295
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 231 AATAGTTCCTTATGTTACGAAGCACCCCTTGGTTACAGCATTGAAGACGTTCGTCCTTTC 290
Query 296 GGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCGCTAAGAGGCCTTCCTGA 355
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 291 GGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCCAACTGCGCTAAGAGGCCTTCCTGA 350
Query 356 GTACCAGCCAATTTCTTCCATAGCTTTTCAATTACAACAATCTCCTTTTCATTTCAAAGC 415
|||| ||||| || | |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 351 GTACTAGCCAGTTCCCTCCATAGCTTTTCAATTACAACAATCTCCTTTTC-T--CAAAGC 407
Query 416 TCTGGTTCCC 425
||||||||||
Sbjct 408 TCTGGTTCCC 417
> AT3G02468.1 | Symbols: CPuORF9 | conserved peptide upstream open
reading frame 9 | chr3:509087-511557 FORWARD LENGTH=1876
Length=1876
Score = 259 bits (140), Expect = 6e-68
Identities = 184/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 163 ATCAATATTCCTTTACATA-AAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCA 221
||| || ||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 191 ATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGTCGAAAGGTGGTA 250
Query 222 ATAAGAAGTCAAGCA-CA--AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTG 278
| |||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 251 AAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCGGTTACAGCATTG 310
Query 279 AAGACGTTCGTCCTTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCG 338
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 311 AAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCAAACTGCT 370
Query 339 CTAAGAGGCCTTCCTGAGTACCAGC 363
| |||||||| ||||||||||||||
Sbjct 371 CCAAGAGGCCATCCTGAGTACCAGC 395
> AT3G02470.1 | Symbols: SAMDC | S-adenosylmethionine decarboxylase
| chr3:509117-511561 FORWARD LENGTH=1953
Length=1953
Score = 259 bits (140), Expect = 6e-68
Identities = 184/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 163 ATCAATATTCCTTTACATA-AAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCA 221
||| || ||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 264 ATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGTCGAAAGGTGGTA 323
Query 222 ATAAGAAGTCAAGCA-CA--AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTG 278
| |||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 324 AAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCGGTTACAGCATTG 383
Query 279 AAGACGTTCGTCCTTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCG 338
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 384 AAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCAAACTGCT 443
Query 339 CTAAGAGGCCTTCCTGAGTACCAGC 363
| |||||||| ||||||||||||||
Sbjct 444 CCAAGAGGCCATCCTGAGTACCAGC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5