BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488447

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15970.1 | Symbols: KIN2, COR6.6 | stress-responsive protein...   497    3e-140
  AT5G15960.1 | Symbols: KIN1 | stress-responsive protein (KIN1) ...   377    4e-104


> AT5G15970.1 | Symbols: KIN2, COR6.6 | stress-responsive protein 
(KIN2) / stress-induced protein (KIN2) / cold-responsive 
protein (COR6.6) / cold-regulated protein (COR6.6) | chr5:5211911-5212665 
FORWARD LENGTH=480
Length=480

 Score =  497 bits (269),  Expect = 3e-140
 Identities = 417/481 (87%), Gaps = 40/481 (8%)
 Strand=Plus/Plus

Query  1    AAAACACACATCAAAAACGATTTTACAAG----AGa-a----aaaaaTGTCAGAGACCAA  51
            |||||||||||||||||||||||||||||    | | |    ||||||||||||||||||
Sbjct  10   AAAACACACATCAAAAACGATTTTACAAGAAAAAAATATCTGAAAAATGTCAGAGACCAA  69

Query  52   CAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT  111
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  70   CAAGAATGCCTTCCAAGCCGGTCAGGCCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT  129

Query  112  TCTCGACAAGGCCAAGGATGCTGCTGCTGGAGCTGGAACTGCCGCGCAACAGGCGGGAAA  171
             || ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct  130  GCTGGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAGGCGGGAAA  189

Query  172  GAGTATATCGGATGCGGCAGCTGG-AGGTGTTAACTTCGTGAAGGAGAAGACCGGCATGA  230
            |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||
Sbjct  190  GAGTATATCGGATGCGGCAG-TGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGA  248

Query  231  ACAAGTAGCGATTCGAGTCAAAATTGGGAGTTATATATAATTTCCCTTATCTAATCTAAT  290
            |||||||||||| ||||||||  |||||||||||| ||  || ||||| | |   |||||
Sbjct  249  ACAAGTAGCGATCCGAGTCAACTTTGGGAGTTATA-AT--TT-CCCTT-T-T---CTAAT  299

Query  291  TAATTGTTGGGATTTT-AAATAAACTT-GGGACTCATAATTGATTCTC---CT--T-GT-  341
            |||||||||||||||| ||||||| || |||| |||||||||||||||   ||  | || 
Sbjct  300  TAATTGTTGGGATTTTCAAATAAAATTTGGGAGTCATAATTGATTCTCGTACTCATCGTA  359

Query  342  -T-GTTGTC-TTT--AGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTA-T--  393
             | |||||  |||  ||||||||||||||||||||||||||||||||||||||||| |  
Sbjct  360  CTTGTTGTTGTTTTTAGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTACTAC  419

Query  394  GTTTGGATGTTTATGTATTTTTAGCAACAACATCTAGTTTATGTTCCAACAACTTTGTTT  453
            |||||||  |||| || ||  |  |||||| |||||||||| |||| || ||||||||||
Sbjct  420  GTTTGGAACTTTAAGT-TTAAT--CAACAAAATCTAGTTTAAGTTCTAAGAACTTTGTTT  476

Query  454  T  454
            |
Sbjct  477  T  477


> AT5G15960.1 | Symbols: KIN1 | stress-responsive protein (KIN1) 
/ stress-induced protein (KIN1) | chr5:5209898-5210727 FORWARD 
LENGTH=549
Length=549

 Score =  377 bits (204),  Expect = 4e-104
 Identities = 288/325 (89%), Gaps = 20/325 (6%)
 Strand=Plus/Plus

Query  1    AAAACACACATCAAAAACGATTTTACAAG------AGa----aaaaaaTGTCAGAGACCA  50
            ||||||||| |||||||||||||||||||      | |    ||||||||||||||||||
Sbjct  48   AAAACACACTTCAAAAACGATTTTACAAGAAATAAATATCTGAAAAAATGTCAGAGACCA  107

Query  51   ACAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  108  ACAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTC  167

Query  111  TTCTCGACAAGGCCAAGGATGCTGCTGCTGGAGCTGGAACTGCCGCGCAACAGGCGGGAA  170
            | || |||||||||||||||||||| ||||| |||||| |||  || |||||||||||||
Sbjct  168  TGCTGGACAAGGCCAAGGATGCTGCAGCTGGTGCTGGAGCTGGAGCACAACAGGCGGGAA  227

Query  171  AGAGTATATCGGATGCGGCAGCTGGAGGTGTTAACTTCGTGAAGGAGAAGACCGGCATGA  230
            ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct  228  AGAGTGTATCGGATGCGGCAGCGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGA  287

Query  231  ACAAGTAGCGATTCGAGTCAAAATTGGGAGTTATATATAATTTCCCTTATCTAATCTAAT  290
            ||||||||||||||| |||||| |||||||||||| ||  || ||||| | |   |||||
Sbjct  288  ACAAGTAGCGATTCGGGTCAAATTTGGGAGTTATA-AT--TT-CCCTT-T-T---CTAAT  338

Query  291  TAATTGTTGGGATTTT-AAATAAAC  314
            ||| |||||||||||| ||||||||
Sbjct  339  TAACTGTTGGGATTTTCAAATAAAC  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5