BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488447 Length=454 Score E Sequences producing significant alignments: (Bits) Value AT5G15970.1 | Symbols: KIN2, COR6.6 | stress-responsive protein... 497 3e-140 AT5G15960.1 | Symbols: KIN1 | stress-responsive protein (KIN1) ... 377 4e-104 > AT5G15970.1 | Symbols: KIN2, COR6.6 | stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) | chr5:5211911-5212665 FORWARD LENGTH=480 Length=480 Score = 497 bits (269), Expect = 3e-140 Identities = 417/481 (87%), Gaps = 40/481 (8%) Strand=Plus/Plus Query 1 AAAACACACATCAAAAACGATTTTACAAG----AGa-a----aaaaaTGTCAGAGACCAA 51 ||||||||||||||||||||||||||||| | | | |||||||||||||||||| Sbjct 10 AAAACACACATCAAAAACGATTTTACAAGAAAAAAATATCTGAAAAATGTCAGAGACCAA 69 Query 52 CAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT 111 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 70 CAAGAATGCCTTCCAAGCCGGTCAGGCCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCT 129 Query 112 TCTCGACAAGGCCAAGGATGCTGCTGCTGGAGCTGGAACTGCCGCGCAACAGGCGGGAAA 171 || ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| Sbjct 130 GCTGGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAGGCGGGAAA 189 Query 172 GAGTATATCGGATGCGGCAGCTGG-AGGTGTTAACTTCGTGAAGGAGAAGACCGGCATGA 230 |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||| Sbjct 190 GAGTATATCGGATGCGGCAG-TGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGA 248 Query 231 ACAAGTAGCGATTCGAGTCAAAATTGGGAGTTATATATAATTTCCCTTATCTAATCTAAT 290 |||||||||||| |||||||| |||||||||||| || || ||||| | | ||||| Sbjct 249 ACAAGTAGCGATCCGAGTCAACTTTGGGAGTTATA-AT--TT-CCCTT-T-T---CTAAT 299 Query 291 TAATTGTTGGGATTTT-AAATAAACTT-GGGACTCATAATTGATTCTC---CT--T-GT- 341 |||||||||||||||| ||||||| || |||| ||||||||||||||| || | || Sbjct 300 TAATTGTTGGGATTTTCAAATAAAATTTGGGAGTCATAATTGATTCTCGTACTCATCGTA 359 Query 342 -T-GTTGTC-TTT--AGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTA-T-- 393 | ||||| ||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 360 CTTGTTGTTGTTTTTAGTGTTGTAATGTTTTAATGTTTCTTCTCCCTTTAGATGTACTAC 419 Query 394 GTTTGGATGTTTATGTATTTTTAGCAACAACATCTAGTTTATGTTCCAACAACTTTGTTT 453 ||||||| |||| || || | |||||| |||||||||| |||| || |||||||||| Sbjct 420 GTTTGGAACTTTAAGT-TTAAT--CAACAAAATCTAGTTTAAGTTCTAAGAACTTTGTTT 476 Query 454 T 454 | Sbjct 477 T 477 > AT5G15960.1 | Symbols: KIN1 | stress-responsive protein (KIN1) / stress-induced protein (KIN1) | chr5:5209898-5210727 FORWARD LENGTH=549 Length=549 Score = 377 bits (204), Expect = 4e-104 Identities = 288/325 (89%), Gaps = 20/325 (6%) Strand=Plus/Plus Query 1 AAAACACACATCAAAAACGATTTTACAAG------AGa----aaaaaaTGTCAGAGACCA 50 ||||||||| ||||||||||||||||||| | | |||||||||||||||||| Sbjct 48 AAAACACACTTCAAAAACGATTTTACAAGAAATAAATATCTGAAAAAATGTCAGAGACCA 107 Query 51 ACAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTC 110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 ACAAGAATGCCTTCCAAGCCGGTCAGACCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTC 167 Query 111 TTCTCGACAAGGCCAAGGATGCTGCTGCTGGAGCTGGAACTGCCGCGCAACAGGCGGGAA 170 | || |||||||||||||||||||| ||||| |||||| ||| || ||||||||||||| Sbjct 168 TGCTGGACAAGGCCAAGGATGCTGCAGCTGGTGCTGGAGCTGGAGCACAACAGGCGGGAA 227 Query 171 AGAGTATATCGGATGCGGCAGCTGGAGGTGTTAACTTCGTGAAGGAGAAGACCGGCATGA 230 ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| Sbjct 228 AGAGTGTATCGGATGCGGCAGCGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGA 287 Query 231 ACAAGTAGCGATTCGAGTCAAAATTGGGAGTTATATATAATTTCCCTTATCTAATCTAAT 290 ||||||||||||||| |||||| |||||||||||| || || ||||| | | ||||| Sbjct 288 ACAAGTAGCGATTCGGGTCAAATTTGGGAGTTATA-AT--TT-CCCTT-T-T---CTAAT 338 Query 291 TAATTGTTGGGATTTT-AAATAAAC 314 ||| |||||||||||| |||||||| Sbjct 339 TAACTGTTGGGATTTTCAAATAAAC 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21615132070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5