BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488459 Length=1356 Score E Sequences producing significant alignments: (Bits) Value AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1738 0.0 > AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5260604-5262840 REVERSE LENGTH=1474 Length=1474 Score = 1738 bits (941), Expect = 0.0 Identities = 1277/1422 (90%), Gaps = 91/1422 (6%) Strand=Plus/Plus Query 1 AAAAATAATAAATGCATGAAAATTAAGCTGTCCACAAATATCACTAATACGACGGCGATA 60 |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||| | Sbjct 36 AAAAATTAGAAATGCATGAAAATTAAGCTGTCCACAAATATCACTATTACGACGCCGAGA 95 Query 61 AAAAGC-A------A--TT--T-T-CCA----G--TTTAAAGCAAAAAATCCTAATTCAA 101 |||||| | | || | | | | | ||||||||||||| ||| ||||| | Sbjct 96 AAAAGCAACTTTCCAGTTTGATATACTATTTTGTTTTTAAAGCAAAAATTCCCAATTCCA 155 Query 102 CCAAAACGTCATCGTTTCAAGTTGTCTTCAACCTCACCCACAC-TTCTTCGGTCTCATCC 160 | ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 156 -CGAAACGTCGTCGTTTCATGTTGTCTTCAACCTCACCCACACTTTCTTCGGTCTCATCC 214 Query 161 TTTTATAAAATCCCTATTTCCTCTGACGATTTTTCG---------C-ctctctctctctc 210 |||||||||||||| ||||||||| ||||||||||| | ||||||||||||| Sbjct 215 TTTTATAAAATCCCCATTTCCTCTAACGATTTTTCGCCTCTCTCTCTCTCTCTCTCTCTC 274 Query 211 tctctc--tc-tc--tc-tct-c-tc-tc--tctctctc-ct-ct-T-CCGGAGATTTTT 255 |||||| || || || ||| | || || |||||||| || || | |||||||||||| Sbjct 275 TCTCTCTTTCTTCTATCTTCTCCGTCATCGTTCTCTCTCTCTCCTCTCCCGGAGATTTTT 334 Query 256 ACTCAGGCGTTCTTCTGTGGATCAAAGGTGAAGAAGATGAATCATTGCAACCTTCAGCAG 315 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 335 ACTCAGGCGTTCTTCTGTGGATCAGAGGTGAAAAAGATGAATCATTGCAACCTTCAGCAG 394 Query 316 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGATCGCAAGGATCTTGTTGTTTGT 375 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 395 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGACCGTAAGGATCTTGTTGTTTGT 454 Query 376 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTCATTCGTCCTCTCAGATTACAT 435 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 455 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTTATTCGTCCTCTTAGATTACAT 514 Query 436 ATGAGTCAAGCTGCTA-CTGATTTGTGTGATTCTAAAGCTGGTGCAGAGCTTTTGGAAAT 494 |||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| Sbjct 515 ATGAGTCAAGCTGC-AGCCGACTTGTGTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAAT 573 Query 495 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCGCCACCATA 554 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 574 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCCCCACCGTA 633 Query 555 TTTTCCTGGCTCACCACCCAGCAGAGCGGCGAACCCATTAGCCCAAGATGCTCGCTTTCG 614 |||||| || |||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 634 TTTTCCCGGTTCACCACCGAGTAGAGCGGCGAACCCATTAGCCCAAGATGCTCGTTTTCG 693 Query 615 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAGCCCA-ATTCGGCAA 673 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 694 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAG-CCATATTCGGCAA 752 Query 674 CCGGTTTTCCGTCTCCATCTTCTTCGTCATCATCGTCG---TCCCGTGGTTGTGTTAGAA 730 |||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 753 CCGGGTTTCCATCTCCATCTTCTTCCTCATCATCGTCGTCTTCCCGTGGTTGTGTTAGAA 812 Query 731 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 872 Query 791 ACCGCCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAA-AAGAA--CAAGTG 847 |||| ||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 873 ACCGTCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAACAAAAAAACAAGTG 932 Query 848 TATATAGAGATTCCGGAATCGTTCA--C-C-AATGCCTAACAGAGGAGGATTTGATTACT 903 || ||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 933 TACATAGAGATTCCGGAATCGTTCGTTCGCCAATGCCTAACAGAGGAGGATTTGATTACT 992 Query 904 ACTGCTGCTACTATTACTACTACCATTTTTGAA-GTAAATGAATATGTTTTTGCTTTTCA 962 |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 993 ACTGCTGCAACTATTACTACTACCATTTTTGAAAGTAAATGAATATGTTTTTGTTTTTCA 1052 Query 963 TCTTTTCCTaagagatcgagagggaagaggaaggaggaaggaggaagatgaagaTCAGTT 1022 |||| |||||||||| ||||| || | ||||| |||||||||||||||||||||||||| Sbjct 1053 TCTTCTCCTAAGAGA--GAGAGAGA-G-GGAAG-AGGAAGGAGGAAGATGAAGATCAGTT 1107 Query 1023 ACCGTCGCCGGTCACCGTTTTTTAACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1082 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1108 ACCGTCGCCGGTCACCGTTT---AACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1164 Query 1083 GCAGTATTTAAATGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1142 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 GCAGTATTTAAAAGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1224 Query 1143 GATCTTTATTACTGTT--ATATATAACTAAG-GGAGAAGATTAGAAGA--A-GT---TGT 1193 |||||||| ||||||| ||||||||||||| || ||||||||||||| | | ||| Sbjct 1225 GATCTTTAGTACTGTTTCATATATAACTAAGAGG-GAAGATTAGAAGATGAAGAAGCTGT 1283 Query 1194 AAAATTTTCTCGGGGaaaaaaaaCTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATG 1253 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 1284 AAAATTTTCTTGGG-AAGAAAA-CTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATC 1341 Query 1254 AATTTGGATTTATCTTCTTTCAGAGAGTATCATCACCATTGTATATAGTAATGTTTAATT 1313 || ||||||||||||||||||||| | ||| | | |||||||||||||||||||| || Sbjct 1342 AACTTGGATTTATCTTCTTTCAGA---T-TCA-C-C-ATTGTATATAGTAATGTTTA-TT 1393 Query 1314 TTCTTCTTCTTGGTGACTTAGTTCTCTCTCACCTTTGTATAT 1355 || | ||| || | || ||||||||||||||||||||||| Sbjct 1394 TT-T-CTTGGTGATTTCTAAGTTCTCTCTCACCTTTGTATAT 1433 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66766724850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5