BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488472
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16220.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 2187 0.0
> AT5G16220.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr5:5298303-5300610 REVERSE LENGTH=1763
Length=1763
Score = 2187 bits (1184), Expect = 0.0
Identities = 1452/1578 (92%), Gaps = 32/1578 (2%)
Strand=Plus/Plus
Query 1 AAAATTGCACCACCATGACCACCGTCTCCTCCGCTTCCGCCGCCGTAACGGAAGGCGCGA 60
||||| ||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 18 AAAATCGCACCTCCATGACCACCGTCTCCTCCGCTTTCGCCACCGTAGCGGAAGGCGCGA 77
Query 61 AGATTGTCACACCGAGCTTGAAGAAGAATGAAAGAAATGGAACGATACGGGTGATGTGTA 120
|| ||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||
Sbjct 78 AGGTTGTCACACCGAGATGGAAGAAGAATGAAAGAAATGGAAAGTTACGGGTGATGTGTA 137
Query 121 GGTATGGCGGTAGTATTCTCTCACTTCCGCAGACGAAATCGCCGCGTTATGTAGGCGGAG 180
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 138 GGTATGGCGGTAGTATAGTTTCACCTCCGCAGACGAAATCGCCGCGTTATGTAGGCGGAG 197
Query 181 ATACTCGAATCGTCGCCGTTCCTCCCTCCGCGGAAACGAGCTTCGATTCTCTTGTTAGCC 240
||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 198 ATACTCGAATCGTCGCCATTCCTTCTTCCGCGGAAACGAGCTTCGCTTCTCTTGTTAGCC 257
Query 241 ACCTTACGGTTACGCTCGGAATCTCTTATCCTTTCAAGGTTAAGTATCAGCTTCCTGATC 300
||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct 258 ACCTTACGGTTACGCTCAAAATCTCTTATCCTTTCAAAGTTAAATATCAGCTTCCTGATC 317
Query 301 AGGAACTGGATTCGCTTATCTCCGTCGAGACAGATGAGGATGTTCAGATCATGATGGAAG 360
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 318 AGGAACTAGATTCGCTTATCTCCGTCGAGGCGGATGAGGATGTTCAGATCATGATGGAAG 377
Query 361 AACACGGATATCTCCCCTCCGAGTCCTCGATTCCCCAATCGCGTATCCGATTGTTTCTTT 420
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AACACGGTTATCTCTCCTCCGAGTCCTCGATTCCCCAATCGCGTATCCGATTGTTTCTTT 437
Query 421 TCCCATTG--------A-AATC--A-GAAGCTGGTGCGAGTCAGGGAGATTCAGATCAGT 468
|||||||| | |||| | |||||||||||||||||||||||||| |||||||
Sbjct 438 TCCCATTGAAATCACAACAATCGAATGAAGCTGGTGCGAGTCAGGGAGATTCGGATCAGT 497
Query 469 GTAAAGTGGAGACTGATATCGATTGGCTTGGAATCGAAGAGTC---TAAGCCTATTAGCG 525
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 498 GTAAAGTGGAGACCGATATCGATTGGCTTGGAATCGAAGAGTCTAATAAGCCTATTCGTG 557
Query 526 ACGAGTTGACACAGCCGGTGCTTCAGCACCCTAAGACGGAGATGTGGTTCGTAGACGCGT 585
| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 558 AAGAATTGACTCAGCCGGTACTTCAGCACCCTAAGACGGAGATGTGGTTCGTAGACGCTT 617
Query 586 TGAAGAGCGCGGAGATGTTGCAGAGTGGGCGAAATAATAGCGGAAGTAGCGGAAGTGGAG 645
||||||||| ||||||| |||||| | | |||| ||||||||||| ||||||||||||||
Sbjct 618 TGAAGAGCGTGGAGATGATGCAGACTAGACGAACTAATAGCGGAACTAGCGGAAGTGGAG 677
Query 646 ATGGCAACGGCGGGATTTGCGGACAGGAGTCGATGATGCTCGAGACCAATTCCTCCTTTG 705
|||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 678 ATGGTAACGGCGGGATTTGTGGACAGGAGTCGATGATGCTAGAGACTAATTCATCCTTTG 737
Query 706 GCTCGACATCATCCTCGGTTTCTTCGAGCAATTTACCTCCGATGAAAAGCACCGGCGAGG 765
|||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct 738 GCTCGACATCATCCTCGGTTTCGTCGAGCAATTTACCTCCGATAAAAAGCTCCGGCGAGG 797
Query 766 ACAACACAGCGAATTCGCAGGTCAAATTTGCGCCAATAGAATCAGTGACAAGAAACAACA 825
|||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 798 ACAACATAGCGAACTCGCAAGTCAAATTTGCGCCAATAGAATCAGTGACAAGCAACGACA 857
Query 826 ATACTGCAGTCACCCCAAT-CTCTTCTCACGAGCTACCATCACACTCACATGCTTTTGAG 884
|| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 858 ATTCTGCAGTCACCCCAATAC-CTTCCCACGAGCTACCATCACACTCACATGCTTTTGAG 916
Query 885 AACAAACCGTCTTCAAACTTGTATGAGGCTGAGCTAAACAGACCAGTTCCAATCCCAATT 944
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 917 AACAAACCGTCTTCAAACTTGTATGTGGCTGAGCTAAACAGACCAGTTCCAGTCCCAATT 976
Query 945 TCCGGGTATCCACCATTTATGAACCAAGCTCAACAACAACATATCCAAGTCATTTACACT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TCCGGGTATCCACCATTTATGAACCAAGCTCAACAACAACATATCCAAGTCATTTACACT 1036
Query 1005 GGACAACCTTACATTACCGGAAACTCACCTATGACATTGCCTGCCACAGCATACCATCAC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGACAACCTTACATTACCGGAAACTCACCTATGACATTGCCTGCCACAGCATACCATCAC 1096
Query 1065 ACAAACCACATCCATTATCAGCTTCCGCCACAACCATACCCAATCTATTACATTCCAGTC 1124
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1097 ACAAACCACGTCTATTATCAGCGTCCGCCACAACCATACCCAATCTATTACATTCCAGTC 1156
Query 1125 GAGCAATACAGTTCGAGGCACGTTCAACCACCGCCTGTGAAACCGGGCACCGTTTTAAAC 1184
||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 1157 GAGCAGTACAGTTCGAGGCACGTTCAAGCACTGCCTGTGAAACCGAGCACCGTTTTAAAC 1216
Query 1185 TCTCACCAAGTTGATTCTCAGGTGGTCCGCACCAGCAGCCCTCTAGCACCAGAGTTTTCC 1244
| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1217 TATCACCAAGTTGATTCCCCGGTGGTCCGCACCAGCAGCCCTCTAGCGCCAGAGTTTTCC 1276
Query 1245 TCGCAGGTTTATCCTCCATCCAATCCCGTTGATTCATCGGTACAAACATCAAGTGAAGCT 1304
|| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1277 TCACAGGTTTATCCTCTATCCAAACCCGTTGATTCATCGGTACAGACATCAAGTGAAGCT 1336
Query 1305 ACTCTTAGTACTACTTGCA-GAGATGTTTTCATCTATAACACCGACGACGATGACAACAA 1363
||||||| |||||||| || |||||| |||||||||||| ||||| | ||||||| ||||
Sbjct 1337 ACTCTTAATACTACTT-CAAGAGATGCTTTCATCTATAATACCGATGTCGATGACGACAA 1395
Query 1364 CGATATGGCTCGTGCTCAGATTTACAAATCTCAGCCTCCAGCTCCCACATTACCGTCTCA 1423
|||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 CGATATAGCTCATGCTCAAATTTACAAATCTCAGCCTCCAGCTCCCACATTACCGTCTCA 1455
Query 1424 GTATTAAACCATTATGCTGTCCGAAGCTTTCAGTCAGTTACACGCACACACGCACACAAT 1483
|||||||||||||||| | ||||||||||||||||| |||| | |||||| | |
Sbjct 1456 GTATTAAACCATTATGGTAACCGAAGCTTTCAGTCAGGTACA-G-ACACACT-A-----T 1507
Query 1484 GCTTGAGAGATCTTAGAA-CCC-T---TTCTCGTGTTACTGCACTTTCAGGTATTTGGTT 1538
||||||||||||| |||| ||| | ||||| |||| |||||||||||||||||||| |
Sbjct 1508 GCTTGAGAGATCTAAGAATCCCATCCATTCTCATGTTGCTGCACTTTCAGGTATTTGGCT 1567
Query 1539 TTACAGTTTTGTTTTGGT 1556
||||| ||||||||||||
Sbjct 1568 TTACAATTTTGTTTTGGT 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5