BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488480 Length=1734 Score E Sequences producing significant alignments: (Bits) Value AT5G16290.1 | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333764-... 2508 0.0 > AT5G16290.1 | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333764-5337744 FORWARD LENGTH=1804 Length=1804 Score = 2508 bits (1358), Expect = 0.0 Identities = 1629/1752 (93%), Gaps = 50/1752 (3%) Strand=Plus/Plus Query 1 TCACCCAAAGTTTCCctctttctctcttcttcttctctctGCTGTTTTCCGCCTCACACC 60 |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| Sbjct 40 TCACCCAAAGTTTCTCTCTTTCTCTCTTC-TC--CT-TCTGCTGTTTTCCGCCTCACACC 95 Query 61 ATTACTCTCCCA-ACAATGGCGGCGACGGCGACTGCTGCTTCACTA-T-TC--C-CATCT 114 |||||||||||| | ||||||||||||| |||||||| ||||| || | || | | ||| Sbjct 96 ATTACTCTCCCAGA-AATGGCGGCGACGACGACTGCTACTTCATTATTCTCATCTCGTCT 154 Query 115 T-ACTTCCAGAATCAGATTAAAGTTTATGGCTTTCCGGCGAAAACCCCCAACTCCGTGCA 173 | ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| |||| Sbjct 155 TCACTTCCAGAATCAGAATCAAGGTTATGGGTTTCCGGCGAAAACCCCCAACTCCCTGCA 214 Query 174 AGTAACTCAAATCATCGACGGGAGGAAGATGAGAAATGCCACTGTTCTCTCTGCTGCCTC 233 ||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 215 AGTAAATCAGATCATCGACGGGAGGAAGATGAGGAATGCCACTGTTCTCTCAGCTGCTTC 274 Query 234 CACCGATAAAGCCATCACCACCGCTCAATCTGTAGCTGCGACGGCTAGTGATAGAGTAAG 293 ||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct 275 CACTGATAAAGCCATCACCACTGCTCAATCTGTAGCTCCGACGGCTTGTGATAGAGTAAG 334 Query 294 GAGGCATACCATCTCGGTGTTTGTGGGTGATGAGAGCGGTATAATAAACCGGATTGCTGG 353 ||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||| Sbjct 335 GAGGCATACAATCTCGGTGTTTGTGGGCGATGAGAGCGGTATAATAAATAGAATTGCTGG 394 Query 354 AGTGTTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTGGGATTGAATGAAGACAA 413 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 395 AGTATTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTAGGATTGAATGAAGACAA 454 Query 414 GGCTCTGTTTACTATCGTTGTTCTTGGGACAGACAAAGTCTTGCAACAAGTCGTAGAACA 473 ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 455 GGCTCTGTTTACTATAGTTGTTCTTGGAACAGATAAAGTCTTGCAGCAAGTTGTAGAACA 514 Query 474 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 574 Query 534 ACGTGAATTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 593 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 ACGTGAGTTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 634 Query 594 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCACTCTCTAACGATTGA 653 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 635 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCAATCTCTAACGATTGA 694 Query 654 GGTAACTGGAGACCCAGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 713 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 GGTAACTGGAGACCCTGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 754 Query 714 AAAAGAAATTGCAAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 773 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 AAAAGAAATTGCGAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 814 Query 774 TCCGTTTTGGAGATTTTCAGCGGCATCATACCCACATCTTGTAAAGGAATCATCATCTCA 833 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 815 TCCGTTTTGGAGATTTTCAGCGGCATCATATCCACATCTTGTAAAGGAATCATC-TC--A 871 Query 834 TGAAACTGTTGCAGAGAAAACAAAGCTAGCATTGAATGGAAATGGCAATGCATCATCGGG 893 ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| || Sbjct 872 TGAGACTGTTGCAGAGAAAACAAAACTAGCATTGACTGGAAATGGCAATGCATCATCCGG 931 Query 894 GGGTGACGTTTATCCAGTGGAACCCTATAATGATTTCAAACCGGTCCTTGACGCTCATTG 953 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 932 GGGTGACGTTTATCCAGTGGAACCCTATAACGATTTCAAACCGGTCCTTGACGCTCATTG 991 Query 954 GGGAATGGTCTATGACGAAGATTCGAGCGGACTCCGGTCCCACACATTATCTTTACTTGT 1013 |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 992 GGGAATGGTCTACGATGAAGATTCGAGCGGACTTCGGTCCCACACATTATCTTTACTTGT 1051 Query 1014 GGCCAACGTTCCCGGTGTTCTCAATCTAATAACTGGAGCTATCTCCAGGAGAGGTTATAA 1073 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1052 GGCCAACGTTCCCGGAGTTCTCAATCTAATAACTGGAGCTATCTCTAGAAGAGGTTATAA 1111 Query 1074 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1171 Query 1134 TATCCCCGGAACTGATGAAAATATAGACAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1193 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1172 TATTCCCGGAACTGATGAAAATATAGATAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1231 Query 1194 TCTTCAGGAGATACAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1253 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1232 TCTTCAGGAGATCCAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1291 Query 1254 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTCTCGATATTGCTCAAGTTTTCCG 1313 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1292 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTTTAGATATTGCTCAAGTTTTCCG 1351 Query 1314 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTTAG 1373 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1352 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTCAG 1411 Query 1374 AAAAATGTCTGCACTACAAACGCAGTTAGAGGCCTATGGACTCTGCGAGGTGGCTAGGAC 1433 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1412 AAAAATGTCTGCATTACAAACGCAGTTAGAGGCCTATGGAATCTGCGAGGTGGCTCGGAC 1471 Query 1434 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1472 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1531 Query 1494 TCTTCCTTTGTAGTTCCAAAGGTTAGATGAAAGGATCTT-CTTGTGCAGAGGACTT-ACC 1551 |||||||||||||||| | ||| || ||| ||| | | || || ||| | Sbjct 1532 TCTTCCTTTGTAGTTC------T-AGA-GA--GGA-CTTGCC-G--CA-AG--CTTCAGT 1574 Query 1552 G-CAAGCTTCAGTGTA--CTAGTCAAAAGGACTGCACATTGTTT-----TCTGTGATTGA 1603 | | | ||| || | ||||||||||||||||||| |||||| ||||||||||| Sbjct 1575 GTC--G-TTCC-TGGAAACTAGTCAAAAGGACTGCACGTTGTTTCAGCATCTGTGATTGA 1630 Query 1604 TTGCTTCCTCACGAGCCATGGCGTTTGGAGTTGTTGTTATAGGAGGACCTGTTT-AGTGA 1662 ||||||||||||||| ||||||| || |||||||||||||||||||| || ||| | ||| Sbjct 1631 TTGCTTCCTCACGAGTCATGGCGCTTCGAGTTGTTGTTATAGGAGGAGCTATTTTA-TGA 1689 Query 1663 ACTAAAAATAAATAATAATGTTTGTTCCGTTAGATTAGTTTTGAATACTTTTCTCAAATG 1722 |||||||||||||||| || |||||||||||| |||||||||| ||||| || ||||| Sbjct 1690 ACTAAAAATAAATAATTATCTTTGTTCCGTTAAATTAGTTTTGCATACTAATC--AAATG 1747 Query 1723 TAGAACACTGTT 1734 |||||||||||| Sbjct 1748 TAGAACACTGTT 1759 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85742530860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5