BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488485 Length=1432 Score E Sequences producing significant alignments: (Bits) Value AT5G16320.1 | Symbols: FRL1 | FRIGIDA like 1 | chr5:5344502-534... 1857 0.0 > AT5G16320.1 | Symbols: FRL1 | FRIGIDA like 1 | chr5:5344502-5346019 FORWARD LENGTH=1518 Length=1518 Score = 1857 bits (1005), Expect = 0.0 Identities = 1302/1439 (90%), Gaps = 46/1439 (3%) Strand=Plus/Plus Query 1 AAACAATGACGACGACTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAAG 60 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AAACAATGACGGCGAGTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAGG 60 Query 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCTT 120 Query 121 TCTCTCTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCCCTCCAATCCTCCCTCGCTA 180 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 121 TCTCACTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCTCTCCAATCCTCCCTTGCTA 180 Query 181 ACCGTTTCCGCCTCCTCCAATCTACAGCTCCTTTGCAAGATGATTCGTTTAGACTCGACA 240 |||||||||||||||||| |||||| |||||||| || ||||||||| |||| ||||| Sbjct 181 GCCGTTTCCGCCTCCTCCACTCTACATCTCCTTTGGAACATGATTCGTATAGAATCGACG 240 Query 241 CTTCT-A--C-------T--TCTTCGTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 288 ||||| | | | || || |||||||||||||||||||||||||||||||||| Sbjct 241 CTTCTGATGCAGGGAAATCGTCGTCTTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 300 Query 289 CGGAGTTGATAGCGTTGTGTGAGAAGATGGACGGAATTGGTTTGAGCAAGTATTTGATTG 348 ||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 301 CGGAGTTGAGAGCCTTGTGTGAGAAGATTGACGGAATTGGTTTGATTAAGTATTTGATT- 359 Query 349 TTCA-ATGGGATGATGACGCTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTCT 407 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGGATATGGGATGATGAAACTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTCT 419 Query 408 CCGGATCCGGCGTCCA-------T---G-G--TGAA----C---C-ACACTCCGTCGTCA 446 |||||| ||||||||| | | | |||| | | |||| ||||| ||| Sbjct 420 CCGGATACGGCGTCCATGGTGCTTGACGCGATTGAAGGTTCGAACTACACACCGTCATCA 479 Query 447 TCGGGAAAATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGAG 506 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCGGGAAGATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGAG 539 Query 507 AGT-AATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACGGTTG 565 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 540 A-TCAATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACCATTG 598 Query 566 GAAAACGAAGATAGATACT-AAGCCTTTCGAGGCGTTGGTGTTTCTGCATTTAGTCGCAG 624 |||| | ||| | | | | ||||||||||||||||| |||||||||||||| ||||||| Sbjct 599 GAAATCTAAGGTTGGT-GTCAAGCCTTTCGAGGCGTTAGTGTTTCTGCATTTGGTCGCAG 657 Query 625 CTTTTGAATTGGGATCAGAATTTAACTCAGAGGAGCTTTCTGATTACGTTTTCATGATCG 684 |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 658 CTTTTGAATTAGGATCAGAATTTGACACAGAGGAGCTTTCTGATTACGTTTTCATGATCG 717 Query 685 CTAAGTACAAACAAGCAACTTCGGTGTGTAACAAGATTGGTTTAGATAGGGAAAGAGTCG 744 ||||||| || |||||||||| ||| ||||||||||||||| |||||||| ||||||| | Sbjct 718 CTAAGTATAAGCAAGCAACTTTGGTTTGTAACAAGATTGGTGTAGATAGGAAAAGAGTTG 777 Query 745 GGACACTCATCAAGAAACTCATGGATTCTGGCAAATCAATCTTGGCAGTCAAATTCATGT 804 ||| ||||||||||| ||| |||||||||| ||| |||| || |||||||||||||||| Sbjct 778 GGAAACTCATCAAGACTCTCTTGGATTCTGGTAAACCAATTTTAGCAGTCAAATTCATGT 837 Query 805 ATGAGTGTGGGATGACTGATGAATTCGAGCCAATCTCTGTTTTGAAATCTTACATTAAGG 864 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 838 ATGAGTGTGGGATGACTGATGAATTTGAGCCAATCCCTGTTTTGAAATCTTACATTAAGG 897 Query 865 ACTCTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAGGATAACTACTCTAC-CAAGTCGCAG 923 ||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct 898 ACTGTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAAGATAACTACTCT-CTCAAGTCGCAG 956 Query 924 AACGAAGCCAT-TGATAAAGAAGTCAGTGCAATGAAAGCAGCGATCAAAATCATCAAAGA 982 ||||||||| | |||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 957 AACGAAGCC-TCTGATAAAGAAGTCAGTGCCTTGAAACCATTGATCAAAATCATCAAAGA 1015 Query 983 TCAGAACCTTGAATCCGAGTTTACTCAGGAGAAAGTTGAGGAGCGTGTAGAAGAGCTGGA 1042 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1016 TCAGAACCTTGAATCAGAGTTTACTCAGGAGAAAGTTGAGGAACGTGTAGAAGAGCTGGA 1075 Query 1043 GAAGTATAAGGCACTGAGGAAACGCAACACCACTAATCCTCCCAAGGAAGAGCCACAGCA 1102 ||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1076 GAAAAATAAGGCATTGAGGAAACGCAACACGACTAATCCTCCCAAGCAAGAGCCACAGCA 1135 Query 1103 AAAGGGGAAAAAACGGACGCGTGACTGC---AATGGGACACAAGTTCCAGCTCCGAGTCA 1159 |||||||||||| ||||| | |||||| |||||| |||||||||||| ||||||||| Sbjct 1136 AAAGGGGAAAAAGCGGACTAGAGACTGCAAAAATGGGTCACAAGTTCCAGTTCCGAGTCA 1195 Query 1160 GCAGCTACTTTCTAGACCAGAAGCTCTGCTTATGCCTGAGCATAGTCATCATGGCTTACA 1219 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1196 GCAGCTACTTTCTAGACCAGAAGCTCTTCTTATGCCTGAGCATAGTCATCATGGCTTACA 1255 Query 1220 GTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAGC 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1256 GTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAAC 1315 Query 1280 CGGGCTCTTTGGTTCCGCTGCAACTCCTCAACCTCTTTACTATGCTCAGCAAACTGGATT 1339 |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1316 TGGGCTCTTTGGTTCAGGTGCAACTCCTCAATCTCTTTACTATGCTCAGCAAACTGGATA 1375 Query 1340 TGTATTGCCGCCTCAATACCACCCACCTTATTATTCTCAGTAGCTAGCAGCATCTCGAC 1398 ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1376 TGTGTTGCCGCCTCAATACCACCCGCCTTATTATTCTCAGTAGCTAGCTGCATCTCGAC 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70581966270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5