BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488510 Length=1490 Score E Sequences producing significant alignments: (Bits) Value AT5G16540.1 | Symbols: ZFN3 | zinc finger nuclease 3 | chr5:540... 2104 0.0 AT3G02830.1 | Symbols: ZFN1 | zinc finger protein 1 | chr3:6138... 318 8e-86 > AT5G16540.1 | Symbols: ZFN3 | zinc finger nuclease 3 | chr5:5403188-5405154 FORWARD LENGTH=1497 Length=1497 Score = 2104 bits (1139), Expect = 0.0 Identities = 1374/1483 (93%), Gaps = 34/1483 (2%) Strand=Plus/Plus Query 23 TCT-TCTGCTTTCTCTCTCTAGACGTG-----T--TTCTCT-ATGTCTTCCTCCATTGTC 73 ||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| | Sbjct 34 TCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCC 93 Query 74 ATTACCTCTAAACTCTCCACAATCGGAGGAAGACGATTCGTGGGAGGAAGAGAAACGATG 133 ||| ||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 94 ATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATG 153 Query 134 GGATTTCCCGTCGGAAAATCTC-TAGAGTGAGAAGAATTATGGCGTG-TCTTAATGCTTA 191 ||| ||||| |||||||||||| ||||||||| |||||||||| ||| |||||||||||| Sbjct 154 GGACTTCCCATCGGAAAATCTCTTAGAGTGAG-AGAATTATGGTGTGTTCTTAATGCTTA 212 Query 192 ATACTCACGGACGCAGCCATTGTTCGTCATCATCTCCATGGATTTTGATTCCAGAGTTCC 251 ||| |||| ||| |||||||||||| |||||||||||||||| || || || || | Sbjct 213 ATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGA--TT--TT---GA-TT-C 263 Query 252 CATTTCACGGGAAAGCACTTCTCTTTCCACGTTGCTTAACCAAGATGCAATGTGGCAAAT 311 |||||| ||||||||||||| ||||||| | |||||||||||| |||||||||||||||| Sbjct 264 CATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAAT 323 Query 312 GAACTTGGGATCAGATGATACAATGGGTCTTGATGGGTCTTATCCGGAACGTCACGGAGA 371 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 324 GAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGA 383 Query 372 GCCAGATTGTGCTTATTACATAAGGACTGGACTTTGTAGGTTTGGTTCTACTTGCCGATT 431 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 384 GCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATT 443 Query 432 CAATCATCCCCACGACCGGAAACTGGTTATAGCAACAGCAAGGATTAAAGGAGAATACCC 491 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 444 CAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCC 503 Query 492 TGAAAGAATTGGGCAGCCTGAATGTGAGTTTTATCTTAAAACAGGAACCTGCAAATTCGG 551 |||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 504 TGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGG 563 Query 552 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGGATTGATGGAAGTGTATCAGT 611 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 564 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGT 623 Query 612 TAATGTCTTAGGCTATCCTCTACGTCCAAACGAAGATGATTGTTCTTACTTTTTGAGAAC 671 |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 624 TAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAAT 683 Query 672 TGGGCACTGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 731 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 TGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 743 Query 732 CTTGATGGTTTCTCTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAACCTCCAACTGATGG 791 ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 744 CTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAAC---TGG 800 Query 792 TCAACAGTCTTATTCTTGGCCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTGGCAAGA 851 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 801 TCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGA 860 Query 852 TCCTTCTAGTTTCTCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCAGG 911 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 861 TCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGG 920 Query 912 AAACTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCAGAAAGACC 971 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 921 AAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACC 980 Query 972 AGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1031 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 AGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1040 Query 1032 CAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCTGATTGTGTCTTAAGCTCTGT 1091 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| || Sbjct 1041 CAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGT 1100 Query 1092 TGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTCTATTCGCGGTATGGGATCTG 1151 |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1101 TGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTG 1160 Query 1152 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1220 Query 1212 TGA-TGCATCTCCTTCTCCTTCATCATCT-TCGCATCAAGAGACTGCCATCACCACACAG 1269 | | ||||||||||||||||||||||||| | ||||||||||||||| ||||||||| || Sbjct 1221 T-ACTGCATCTCCTTCTCCTTCATCATCTCT-GCATCAAGAGACTGCAATCACCACAGAG 1278 Query 1270 CTCAGGAATCTCATAGTCTCTTCTTCAGTGGAAGCAACACCCACAACACTCCCTGAAACA 1329 |||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct 1279 CTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACA 1338 Query 1330 ACCTCTGCTAAAGAAACCATTGTTCATGCACAACACTGAAA-CCACTTTGTTTTGTCTGT 1388 |||||||||||||| ||||||||| ||||||| |||||||| || || |||||||||| | Sbjct 1339 ACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACC-CTGTGTTTTGTCTAT 1397 Query 1389 CTTGAA-CAACATTTAACATTTGTTTTGTTTTATCTCGTAAACATTTATGTACAGAGATG 1447 |||||| ||| || |||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 1398 CTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATG 1457 Query 1448 AGAAATTAACTTCTGATCTGATTCGCCTTTTGTTGTAATTTTC 1490 | | | | | || |||||||||||||||||||||||||||| Sbjct 1458 ATATCTGA--T-CTAATCTGATTCGCCTTTTGTTGTAATTTTC 1497 > AT3G02830.1 | Symbols: ZFN1 | zinc finger protein 1 | chr3:613802-616144 FORWARD LENGTH=1695 Length=1695 Score = 318 bits (172), Expect = 8e-86 Identities = 271/319 (85%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 897 CGGGTTTC-ATTCAGGAAACTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 951 |||||| | || | ||| |||||||||||| |||| | |||||||| || || || Sbjct 1019 CGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTAT-TATGCATTGCCGAGGGAA 1077 Query 952 AATGTATTCCCAGAAAGACCAGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGAT 1011 ||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 1078 AATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1137 Query 1012 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCT 1071 ||||||||||| ||||| ||||||||||| ||||| |||||||||||| | ||| ||||| Sbjct 1138 TGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1197 Query 1072 GATTGTGTCTTAAGCTCTGTTGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTC 1131 |||||| |||||||||| |||||||||| ||||||| ||||||||| |||| |||||| Sbjct 1198 GATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1257 Query 1132 TATTCGCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1191 ||| | || ||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1258 TATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGCGA 1317 Query 1192 GTCTTCACTTACAACAACA 1210 || ||||| ||| |||||| Sbjct 1318 GTATTCACATACGACAACA 1336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73493597880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5