BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488524
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16650.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 634 0.0
> AT5G16650.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:5463177-5465331 REVERSE LENGTH=912
Length=912
Score = 634 bits (343), Expect = 0.0
Identities = 365/376 (97%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 48 ATGGAAGACAATGATAAGTCTCCCCCTAAGGATTACTATAAGATTCTAGAAGTTGATTAT 107
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ATGGAAGACAATGATAAGTCTCCCCCTAAGGATTACTATAAGATTCTAGAAGTTGATTAC 316
Query 108 GACGCAACTGAGGAATTGATCCGACTCAATTATCGGAAGCTTGCTTTGAAGTGGCATCCT 167
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 317 GACGCAACTGAGGAATTGATCAGACTCAATTATCGGAAGCTTGCATTGAAGTGGCATCCT 376
Query 168 GATAAGCACAAAGGCGATAGTGCAGCTACAGAAAAATTTCAAGAGATAAATGAAGCTTAT 227
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 377 GATAAGCACAAAGGCGATAGTGCAGCTACAGAAAAATTTCAAGAGATTAATGAAGCTTAT 436
Query 228 AATGTGCTGATGGACCCTACTAAACGTTTTGAGTATGATTTCACTGGTATTTATGAGATC 287
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 437 AATGTGCTGATGGACCCTGCTAAACGTTTTGAGTATGATTTCACTGGTATATATGAGATC 496
Query 288 CACAAGTATACTTTACGGGAATATCTCGCCAGATTTAAGGGGATGATACTCACTTGCAAT 347
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 497 CACAAATACACTTTACGGGAATATCTCGCCAGATTTAAGGGAATGATACTCACTTGCAAT 556
Query 348 GGGCTTGGTATCAGCCAATCCTCATCACCATGGACACATCAATTGGCGGAGACCACCAAA 407
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 557 GGGCTCGGTATCAGCCAATCCTCATCACCATGGACACATCAATTGGCTGAGACCACCAAA 616
Query 408 CAACAGACGAGCAAGG 423
||||||||||||||||
Sbjct 617 CAACAGACGAGCAAGG 632
Score = 414 bits (224), Expect = 5e-115
Identities = 262/279 (94%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 468 GATACTGTATAAACTGAAGCAGAAGTTAGAAGAGATCTGTAAAACTGTACAAAACTGGAG 527
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 632 GATACTGTATAAACTGAAGCAGAAGTTAGAAGAGGGCTGTAAAACTGTACAAAACTGGAG 691
Query 528 CTATAGCGCTTTTTATCGCGCATTGATGATATAGTGAAATGCTTTAATTAGGTCTGTTGT 587
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 692 CTATAGCGC-TTTTATCGCGCATTGATGATATAGTGAAATGCTTTGATTAGGTCTGTTGT 750
Query 588 ATTGTTTCTTTATCGATGTAGAATTAGAGAAGCTTGTATTGTCGATGGCTTCTATTCATA 647
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 751 ATTGTTTCTTTATCAATGTAGAATTAGAGAAGCTTGTATTGTCTCTGGCTTCTATTAATA 810
Query 648 CATTCACACATTGGTGATGGTTCAAATCTTTTACTA-T--ACTATTCTCATCATTCATGG 704
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 811 CATTCACACATTGGTGATGGTTCAAATCTTTTACCACTCTACTATTCTCATCATTCATGG 870
Query 705 TTTTTCCAGACTTTAAACATAAAGTGAATAATACAATCT 743
|||| |||||||| | ||| || ||||||||||||||||
Sbjct 871 TTTT-CCAGACTTGAGACA-AA-GTGAATAATACAATCT 906
Score = 73.1 bits (39), Expect = 3e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 ACGAAAACTCATAAAGCCAAAGCCTTTCTTCTTCTTCTT 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGAAAACTCATAAAGCCAAAGCCTTTCTTCTTCTTCTT 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5