BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488536
Length=2945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16780.1 | Symbols: DOT2, MDF | SART-1 family | chr5:5517490... 4481 0.0
> AT5G16780.1 | Symbols: DOT2, MDF | SART-1 family | chr5:5517490-5522258
REVERSE LENGTH=3061
Length=3061
Score = 4481 bits (2426), Expect = 0.0
Identities = 2813/2990 (94%), Gaps = 65/2990 (2%)
Strand=Plus/Plus
Query 1 GCAAAATTGTTCTCCTCTCTTGGCCACC--AGAGTCTCTCCGTCTCTTTCCACGGCGAGT 58
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCAAAATCGTTCTCCTCTCTTCGCCACCAGAGAGTCTCTCCGTCTCTTTCCACGGCGAGT 60
Query 59 TTGCGATCGTCCGCGGTTTGCTGTTAGTCGTTATCTCTCTCGCTTGAAGCATTCCTTTCT 118
||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||
Sbjct 61 TTGCGATCGTCCGCGGTTTGCTGTTTGTCGTCATCTCTCTCGTTTGAAGCATTCTTTTCT 120
Query 119 AAATTTCTTGGCAGTTACTAGGGCTTTATCTTCTAAACCTTACTATTCGTC-GTGTGCTT 177
||| ||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 121 AAA-TTCTTCGCAGTTGCTAGGTCTTTATCTTCTAAACCTTACTATTCGTCGGTGTGCTT 179
Query 178 TCGCAGTTTCTCTCTAAACCCTCGGAAAATTTCTCCTGCAATTCTGGGTTCTTTGTCCGT 237
||||| ||| ||||||||||||||| |||||||||||||||||||| | ||||||| |||
Sbjct 180 TCGCAATTTATCTCTAAACCCTCGG-AAATTTCTCCTGCAATTCTGAGCTCTTTGTTCGT 238
Query 238 CGATCCCAATATTGCAGTACTTTCCATTGAAGGCTTGATCTAGAGGTAATTCA-TAGGCG 296
|||||| |||||| ||||||||||||||||||| ||||||||||||| || | || |
Sbjct 239 CGATCCGAATATT-CAGTACTTTCCATTGAAGGTTTGATCTAGAGGT-CTTGACTA-AAG 295
Query 297 TT-TTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAAGCAGGGAAGAGAGGGCT 355
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 296 TTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCT 355
Query 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415
Query 416 AGGAGCAAGGAT-----AAA-G---AT-A---AG---A-A-CAGGGATAAGGACCACCGC 457
|||||||||||| ||| | || | || | | |||||||||||||||||||
Sbjct 416 AGGAGCAAGGATAAAGAAAAGGACTATGATCGAGAAAAGATCAGGGATAAGGACCACCGC 475
Query 458 AGGGATAAGgagaaagagagagaccgaaaaag-agatagagaAGGGGACACTGACAAGGA 516
|||||||||||||||||||||||||||||||| || |||||| | ||||||||| |||||
Sbjct 476 AGGGATAAGGAGAAAGAGAGAGACCGAAAAAGAAG-TAGAGATGAGGACACTGAGAAGGA 534
Query 517 GATCTCTagaggtagagataaagagagggagaaagataagaccagagatcgggtaaaaga 576
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 535 GATCTCTAGAGGTAGAGATAAAGAGAGGGAGAAAGATAAGAGTAGAGATCGGGTTAAAGA 594
Query 577 aaaggagaaggaaaaagaaagagatagacataaagatagggaaaatgagagggatagtga 636
|||||| |||||||| |||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 595 AAAGGACAAGGAAAAGGAAAGAAATAGACATAAAGATAGAGAAAATGAGAGGGATAACGA 654
Query 637 aaaggaaaaagaCAAGGATCGGTCAAGAGTGAAGGAGAGAGCCAGTAAGAAAAGTCATGA 696
|||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||
Sbjct 655 GAAGGAAAAAGACAAGGATAGGGCAAGAGTCAAGGAGAGAGCGAGTAAGAAAAGTCATGA 714
Query 697 AGATGATCACGAGACTCATAAAGCTGCAGAAAGATATGAACATTTTGACAACAGAGGTCT 756
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 715 AGATGATGACGAGACTCATAAAGCTGCAGAAAGATATGAACATTCTGACAACAGAGGTCT 774
Query 757 GAATGAAGGTGACGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCCTTGGA 816
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 GAATGAAGGTGGCGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCGTTGGA 834
Query 817 ACTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGTTGAAGATGCTTC 876
|||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 835 CCTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGCTG-A-A------ 886
Query 877 TGATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAAAGAAA 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 887 -GATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAACGAAA 945
Query 937 TGCTGAGAAGCAAAGAGCTCAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 996
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGCTGAGAAGCAAAGAGCACAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 1005
Query 997 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGGGCATCTATCTGGTGTTAAAGTTCTACA 1056
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1006 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGAGCATCTATCTGGTGTTAAAGTTCTACA 1065
Query 1057 TGGTTTGGATAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGGTTTGGAGAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1125
Query 1117 CCTTGCCGATGGTGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1176
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CCTTACCGATGGAGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1185
Query 1177 ACAGAAGCGTCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATATGATGA 1236
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1186 ACAGAAGCGCCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATACGATGA 1245
Query 1237 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCGCAGTACGATGAGGCTGC 1296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1246 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCTCAGTACGATGAGGCTGC 1305
Query 1297 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1365
Query 1357 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACAAATACTTTTGAAGACCTTAA 1416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1366 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACACATACTTTTGAAGACCTTAA 1425
Query 1417 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACATGAAGAAATGCTACGGTTCAAAAA 1476
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1426 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACAGGAAGAAATGCTAAAATTCAAAAA 1485
Query 1477 ACCCAAGAAAAAGAAACAATTGCGGAAAAAGGATAAATTGGACTTAAGTGTGCTGGAAGC 1536
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 1486 ACCCAAGAAAAAGAAACAATTGCGTAAAAAGGATAAATTGGACTTAAGTATGCTTGAAGC 1545
Query 1537 AGAAGCTGTTGCATCGGGATTTGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AGAAGCTGTTGCATCGGGATTGGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1605
Query 1597 GCAGGCCATGAAAGAAGAGAAAGAAAGGAACGATTATGAAAAACGGAGCAATGCCTATCA 1656
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1606 GCAGGCCATGAAAGAAGAGAAAGAAAGGATCGAGTATGAAAAACGGAGCAATGCCTATCA 1665
Query 1657 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGACTACTCAGAAGGGAACAAGTTCAGCC 1716
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1666 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGGCTACTTAGAAGGGAACAAGTTCAGCC 1725
Query 1717 TATTAAAACAGACGAAGATGAGAGTATGGTGTTGGCCGATGATGCTGAAGATCTTTACAA 1776
| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1726 TTTTAAAAGAGATGAAGATGAGAGTATGGTGTTGGCTGATGATGCTGAAGATCTTTACAA 1785
Query 1777 ATCGTTAGAGAAAGCTAGGAGGTTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1786 ATCGTTAGAGAAAGCTAGGAGGCTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1845
Query 1837 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATAGCAC 1896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1846 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATACCAC 1905
Query 1897 CACCGGGGATGAGACACAAGAAAATACCGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1956
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1906 CACCGGGGATGAGACACAAGAAAATACAGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1965
Query 1957 GGGTCTCCAGCGCGAGAAAGATGTGCAAAAGCCTGAAAGCGAAGATGTTTTCATGGAAGA 2016
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1966 GGGTCTCCAGCGCGAGAACGATGTGCGGAAGCCTGAAAGTGAAGATGTTTTCATGGAAGA 2025
Query 2017 AGATGTAGCACCCAAAGCTCCTGTTGAAGTAAAAGAAGAGCACCCCGATGGTTGGACAGA 2076
||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||
Sbjct 2026 AGATGTAGCACCCAAAGCTCCCGTTGAAGTAAAAGAAGAGCATCCTGATGGTTTGACAGA 2085
Query 2077 AGTAAAAGACACTGATATGGATGCAGCAGAGGATTCATCAGACACCAAAGAGATAACTCC 2136
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2086 AGTAAATGACACTGATATGGATGCAGCAGAGGATTCATCAGATACCAAAGAGATAACACC 2145
Query 2137 TGATGAAACTATACACGAGGTTGCTGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2196
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2146 TGATGAAAATATACACGAGGTTGCGGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2205
Query 2197 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACaaaaa 2256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACAAAAA 2265
Query 2257 aaaGAGCAAGCTTGTGGGTATTGTGGATGATGA---AGG-A--G-------G--TAAAGA 2301
||||||||||||||||||||||||||||||||| ||| | | | ||||||
Sbjct 2266 AAAGAGCAAGCTTGTGGGTATTGTGGATGATGATGGAGGTAAAGAATCTAAGGATAAAGA 2325
Query 2302 ATCTAAGGATAGATTCAAGGACATCCGGATTGAAAGGACTGACGAGTTTGGTAGAACTTT 2361
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2326 ATCTAAGGATAGATTCAAGGACATCCGGATTGAGAGGACTGACGAGTTTGGTAGAACTTT 2385
Query 2362 AACTCCAAAAGAAGCCTTTCGATTACTCTCTCACAAATTCCACGGGAAGGGGCCTGGAAA 2421
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2386 AACTCCAAAAGAAGCCTTTCGACTACTCTCGCACAAATTCCACGGGAAGGGGCCTGGAAA 2445
Query 2422 AATGAAGGAAGAGAAACGTATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 AATGAAGGAAGAGAAACGGATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2505
Query 2482 AAATTCAGACACACCATCTCAATCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAGTTGAA 2541
||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 2506 AAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAA 2565
Query 2542 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACTAGTGATCCTCAGAG 2601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2566 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACCAGTGATCCTCAGAG 2625
Query 2602 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGGGACAA 2661
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2626 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGTGACAG 2685
Query 2662 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCGGAGCCTGGAAACTCGGATACACC 2721
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2686 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCAGAGCCCGGAAACTCGGATACACC 2745
Query 2722 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTTCGATGGATAATCAAAAGCTCTTACTTG 2781
||||||||||||||||||||||||||||||||| | | ||||||||||| |||| ||||
Sbjct 2746 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTT--A-G-ATAATCAAAAGGTCTTGCTTG 2801
Query 2782 CGTCTTTCCTTGACATTGATTGGTCTCTGGGAAACT-TTTTCTCAGGATTAGTTAGTCTT 2840
||||||| || ||||||||| |||||||| ||||| |||| |||||||| |||||||||
Sbjct 2802 CGTCTTTGTTTCACATTGATTTGTCTCTGGTAAACTCTTTT-TCAGGATTTGTTAGTCTT 2860
Query 2841 TAGAAAAAGACA--GCTCGATCAATATATAGATTCATGCTG---AGACTGATGATATTTT 2895
||||| |||||| ||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 2861 TAGAAGAAGACATAGCTCGCTCATTATATAGATTCATGCTGCTGAGACTGATGATATTTT 2920
Query 2896 GCTGAAGTTGCCAAAACCGGCATGGGTTTGGTTTCAGTTCTGTAATCAAA 2945
| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2921 GATGAAGTTGCCAAAACCGGTATGGGTTTGGTTTCAGTTCTGTAATCAAA 2970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146387139674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5