BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488545 Length=1143 Score E Sequences producing significant alignments: (Bits) Value AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 | chr5... 1858 0.0 > AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 | chr5:5535869-5538250 FORWARD LENGTH=1180 Length=1180 Score = 1858 bits (1006), Expect = 0.0 Identities = 1102/1148 (96%), Gaps = 8/1148 (1%) Strand=Plus/Plus Query 1 ACACGTTGAGTGCGCGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTCTCTA--TA 58 |||||||||||| | |||||||||||||||||||||||||||||||||||| |||| || Sbjct 1 ACACGTTGAGTGTGAGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTATCTATCTA 60 Query 59 CGCATCATCAATCTCGAAGCAAGTTTCGGTTTTTAGGCCGATCTCTGAATCTGCGTGACA 118 ||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||| Sbjct 61 CGCATCATCGATCTCGAAGTACGTTTCGGTTTTCAGGCCAATCTCTGAATCTGCGTGAC- 119 Query 119 AAAAAGCAAGAAATTACATATCTCTCTCTCT--GCGACTTCGAAGATCAAAATCCATGGC 176 |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 120 -AAAAGCAACAAATTACATATCTCTCTCTCTGCGCGACTTCGAAGATCAACATCCATGGC 178 Query 177 GTCACAGATAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 236 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GTCACAGGTAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 238 Query 237 AAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATTGACATCCAAAGCAGTAACGA 296 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 239 TAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATCGATATCCAAAGCAGTAACGA 298 Query 297 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGTGCAGAGACTGCTGTGCTCTTATC 356 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 299 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGAGCAGAGACTGCTGTGCTCTTATC 358 Query 357 TGGAGCAAGTATTGCCGATCAATCAGTCATCATTGAGATGGCTCCCAACTACAGTCCACC 416 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 359 TGGAGCGAGTATTGCCGATCAATCAGTCATCATTGAGTTGGCTCCCAACTACAGTCCACC 418 Query 417 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 478 Query 477 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCGGTCGGCAA 536 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 479 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCTGTCGGCAA 538 Query 537 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACTTCAACTGCAACCGCAGGAGTTGCTTC 596 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 539 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACCTCAACCGCCACCGCAGGAGTTGCTTC 598 Query 597 ACTAGACCAAAAAATCGGTCTAAGCCAGAAACTTACAGCTGGAACAAGCTTGGTCAACGA 656 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 599 ACTAGACCAAAAAATCGGTCTTAGCCAGAAACTTACAGCTGGAACAAGCTTGGTGAACGA 658 Query 657 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 718 Query 717 AGCTGCGGAACAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 776 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AGCTGCGGAGCAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 778 Query 777 AACTGGTGTGAGTTGGGCCGCAGGAGCATTCAACAGAGTGGCTCAAGCAGCTGGAGAGGT 836 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 779 AACTGGTGTGAGCTGGGCCGCAGGAGCATTCAATAGAGTGGCTCAAGCAGCTGGAGAGGT 838 Query 837 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCGCCACAACCAGCACAGTCGCA 896 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 839 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCATCGCAACCAGCACAGTCGCA 898 Query 897 GCAGCAACTGCCAGAAGGGTATTCTCCAATTCATTCATCCGAATACTCGAAGAACTAATA 956 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 899 GCAGCAACTGCCAGAAGGGTATTCTCCGATTCATTCGTCCGAATACTCGAAGAACTAATA 958 Query 957 TCATCAAGTTAAAACAGTTTCGTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1016 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 959 TCATCAAGTTAAA-CAGTTTCCTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1017 Query 1017 GAAATTTCGTTTGGTCTTTGGGATGTAACATATAAGCTATGCCTGGATTTTCCCTACTAC 1076 ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1018 GAAATCTGGTTTGGTCTTTGGGATGTACCATATAAGCTATGCCTGGATTTTCCCTACCAC 1077 Query 1077 TATTAGACTATAGTTTGGGTTTTT-CCAATATATATATTTAATAAGTTGACATTGAAATC 1135 |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 1078 TATTAGACTATAGTTTGGGTTTTTTCCAATATACATATTTAATAAGTTGACATTTAAATC 1137 Query 1136 TTTCTTTA 1143 |||||||| Sbjct 1138 TTTCTTTA 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56074008765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5