BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488578

Length=1068
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein | chr5:...  1600    0.0  


> AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein | chr5:5649193-5651158 
FORWARD LENGTH=1141
Length=1141

 Score = 1600 bits (866),  Expect = 0.0
 Identities = 1012/1078 (94%), Gaps = 28/1078 (3%)
 Strand=Plus/Plus

Query  3     AAAACGCATGCAACAACATTGATTCAATTAAGAATCAATC-AAGCTTCTTCGTTCGATCA  61
             ||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||||||
Sbjct  72    AAAACGCATGCAACAACATCGA---AATTAAGAATCAATCAAAGCTTCTTCGTTCGATCA  128

Query  62    CACTAGaaaaaaaGAT-G----G-CTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT  115
             ||||||||| |||||| |    | ||||||||||||||||||||||||||||||||||||
Sbjct  129   CACTAGAAAGAAAGATGGCAACGTCTGGTGCGATTTCAGGAGCTACTGTCTCTTCCTTCT  188

Query  116   TCACCAAAACTGCTTCTACTTCAAACCCATCTCCTAAACTCCACTACTCTGCTTCTCTGT  175
             ||||||||||| || ||||||||||||||||||| |||||||| | |||||||||||| |
Sbjct  189   TCACCAAAACTACTACTACTTCAAACCCATCTCCCAAACTCCATTCCTCTGCTTCTCT-T  247

Query  176   TT-TCACAGAAAACTGGGTTTCAGGGAGTTTCATTGGAAGATTCGAAGAAGAGTGTATCA  234
             || ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct  248   TTATCACAGAAAACTGTGTTTCAAGGAGTTTCGTTGGAAGATTCGAAGAAGAGTGTATCA  307

Query  235   GAGATCTTCGTTGTCTCCAAGAGAAAGATTGGAGGGTTAAATGGGTTGAGAAGATTCGAA  294
             |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct  308   GAGATCTTCGCTGTCTCCGAGAGAAAGATCGGAGGGTTAAATGGGTTGAGAAGATTCGAA  367

Query  295   ATCAAAGCGAGAGCAGCAGCTTCTAAAACAATAGAGGTTGAAGTAGACAAGCCTTTGGGT  354
             |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  368   ATCAAAGCGAGAGCAGCAGCTTCTAAGACAATAGAGGTTGAAGTAGATAAGCCTTTGGGT  427

Query  355   CTGACTCTAGGACAGAAGCCAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGTGGG  414
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct  428   CTGACTCTAGGACAGAAGCAAGGCGGTGGAGTTGTCATCACCGGTGTGGACGGAGGAGGG  487

Query  415   AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTGGTGTACACAAGCAGCTTCTTT  474
             |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  488   AACGCAGCAAAAGCAGGGCTTAAATCTGGAGATCAAGTTGTGTACACAAGCAGTTTCTTT  547

Query  475   GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACCGCTATTCAGGCCAAA  534
             |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  548   GGAGATGAGCTTTGGCCTGCAGATAAGCTTGGCTTTACTAAAACTGCAATTCAGGCAAAA  607

Query  535   CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTCAAGAAACTAAAT  594
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  608   CCTGATTCTGTCTACTTTGTTGTTAGCAGAGGTGCAGAAGTTGATGTTAAGAAACTAAAT  667

Query  595   AAGCGTCCAGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAGTA-C  653
             |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  668   AAGCGTCCGGCTCCTCCACGGTTTGGAAGGAAGTTAACTGAGACTCAGAAGGCAAG-AGC  726

Query  654   TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGATGAACA  713
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  727   TACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCCAAATCTTTTGACGAACA  786

Query  714   GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCGAAGTATGA  773
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  787   GCCGGATACATACGTATGTCCTCAATGTATAGCACCAAAGAAGAGGTTTGCAAAGTATGA  846

Query  774   CGTGAACACAGGAAAGGCCATTGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT  833
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  847   CGTGAACACAGGAAAGGCCATAGGAGGAGGATTGCCTCCAATTGGTGTCATTGTTGGCTT  906

Query  834   ATTGGCCGGTCTTGGAGCTGTCGGAGCTTTGCTAGTCTATGGTCTTCAATAGATTTT-CT  892
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct  907   ATTGGCCGGTCTTGGAGCTGTTGGAGCTTTGCTTGTCTATGGTCTTCAATAAATTTTTCT  966

Query  893   -AAACACTTTTATAATCTCTATAAAACAAGTCCTTATTTGAGCTTTGTAATTGTAAACCA  951
              ||| ||||||||||||||||||||||||||||      |  ||||||||||| ||||||
Sbjct  967   TAAA-ACTTTTATAATCTCTATAAAACAAGTCC------G--CTTTGTAATTGCAAACCA  1017

Query  952   AGAATGAATGTTGATGACATCAACTTGGGAGTTAAACTATTGTAAAGCATTTTTTGATTC  1011
             ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||
Sbjct  1018  AGAATGAATGTTGATGACATCAACTTGAGAGTTAAATTAT-GTAAAGCATTTTTCGATTC  1076

Query  1012  TCTCCTTCTTATGTAACT-TTGGTTCTCTCTATAGTCAAATTAGTGCAGCAGCAAGAG  1068
             |||||||||||||||||| ||| || ||||| || ||||| |||||||||||||||||
Sbjct  1077  TCTCCTTCTTATGTAACTCTTGTTT-TCTCTGTAATCAAACTAGTGCAGCAGCAAGAG  1133



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52308967890


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5