BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488585
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17220.1 | Symbols: ATGSTF12, GST26, TT19, GSTF12 | glutathi... 1227 0.0
> AT5G17220.1 | Symbols: ATGSTF12, GST26, TT19, GSTF12 | glutathione
S-transferase phi 12 | chr5:5658460-5659386 FORWARD LENGTH=777
Length=777
Score = 1227 bits (664), Expect = 0.0
Identities = 741/777 (95%), Gaps = 9/777 (1%)
Strand=Plus/Plus
Query 1 ATATTAAAAAGAGCATATAGTAAAATCTTTCTTCTTCGTAACAAAGTTATTGTCAAA-TT 59
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 5 ATATTAATAAGTGCATATAGTAAAATCTTTCTTATTCGTAACAAAGTTATTGT-AAACTT 63
Query 60 ATAGAATGGTTGTGAAACTATATGGACAGGTAACGGCAGCTTGTCCACAAAGAGTTTTGC 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 64 ATAGAATGGTTGTGAAACTATATGGACAGGTAACAGCAGCTTGTCCACAAAGAGTCTTGC 123
Query 120 TTTGTTTTCTCGAGAAAGAAATTGAATTTGAGATTATTCATATCGATCTTGATACATTAG 179
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 TTTGTTTTCTCGAGAAAGGAATTGAATTTGAGATTATTCATATCGATCTTGATACATTTG 183
Query 180 AGCAGaaaaaaa-CAGAACATCTTCTTCGTCAGCCATTTGGCCAAGTTCCAGCCATAGAA 238
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 184 AGCA-AAAAAAACCAGAACATCTTCTTCGTCAGCCATTTGGTCAAGTTCCAGCCATAGAA 242
Query 239 GATGGAGATTTCAAGCTTTTTGAATCACGAGCCATTGCGAGATACTACGCGACCAAGTAC 298
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 243 GATGGAGATTTCAAGCTTTTTGAATCACGAGCCATCGCGAGATACTACGCTACCAAGTTC 302
Query 299 GCGGACCAAGGCACGAACCTGTTAGGCAAGTCTCTAGAGCATCGAGCCATCGTGGACCAG 358
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 303 GCGGACCAAGGCACGAACCTTTTGGGCAAGTCTCTAGAGCACCGAGCCATCGTGGACCAG 362
Query 359 TGGGCTGACGTGGAGACCCATTACTTCAACGCTCTGGCCCATCCCATCGTGATTAACCTA 418
|||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 363 TGGGCTGACGTGGAGACCTATTACTTCAACGTTCTGGCCCAACCCCTCGTGATTAACCTA 422
Query 419 ATCATCAAGCCTAGATTAGGCGAAAAATGTGACGTCGTTTTGGTCGAGGAGCTCAAAGTG 478
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 423 ATCATCAAGCCTAGGTTAGGCGAGAAATGTGACGTCGTTTTGGTCGAGGATCTCAAAGTG 482
Query 479 AAGCTAGGAGTGGTCTTGGACATATACAATAACCGGCTTTCTTCGAACCGGTTTTTGGCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AAGCTAGGAGTGGTCTTGGACATATACAATAACCGGCTTTCTTCGAACCGGTTTTTGGCT 542
Query 539 GGTGAAGAATTCACTATGGCTGATTTGACGCACATGCCGGCGATGGGGTACTTGATGAGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GGTGAAGAATTCACTATGGCTGATTTGACGCACATGCCGGCGATGGGGTACTTGATGAGT 602
Query 599 ATAACCGATATAAACCAGATGGTTAAGGCTCGTGGTAGTTTTAACCGGTGGTGGGAAGAG 658
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 603 ATAACCGATATAAACCAGATGGTTAAGGCTCGGGGTAGTTTTAACCGGTGGTGGGAAGAG 662
Query 659 ATTTCGGATAGACCGTCTTGGAAGAAGCTTATGATGCTGGCTGGTCATTGAATTAGCTCG 718
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 663 ATTTCGGATAGACCGTCTTGGAAGAAGCTTATGGTGCTGGCTGGTCACTGAATTAGCTCC 722
Query 719 AATTTATGATGATC-G--GAACCAAATAAGCTTTATATATTTTCTGTTTTCTGTTTG 772
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||
Sbjct 723 AATTTATGATGATCTGAAGAACCAAATAAGCTTTATAG-TTT-CTGTTTTATGTTTG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5