BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488595 Length=1702 Score E Sequences producing significant alignments: (Bits) Value AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily prot... 2065 0.0 > AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily protein | chr5:5690227-5692902 REVERSE LENGTH=1839 Length=1839 Score = 2065 bits (1118), Expect = 0.0 Identities = 1343/1447 (93%), Gaps = 34/1447 (2%) Strand=Plus/Plus Query 282 TTTCCTTTTCTGCGTTCCAGACC-TTCGAGtttttttttGTTTTCCTCCGGCGAGATCTT 340 |||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct 395 TTTCCTTTTCTGTGTTCCACACCTTTCGAGTTTTTTTTTGTTTTCCTCCGCCGAGATCTT 454 Query 341 TATCCGGGAAGTTATGACGTCGTCTACGTTGACTGCGAATGTTCA-GGT-CTGGTCTCCT 398 ||||||||||||||| |||||||| |||||||||| |||||||| ||| | | || Sbjct 455 AATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTAC-CAAC-GCT 512 Query 399 CCTTCGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 458 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 TCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 572 Query 459 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAACCATACACGATAACAAAAGAAAGA 518 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 573 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGA 632 Query 519 GAGAGATGGACAGATGAAGAGCATAAGAAGTTTGTCGAAGCCTTGAAATTGTACGGGCGA 578 ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 633 GAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGA 692 Query 579 GCATGGAGGCGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 638 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 GCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 752 Query 639 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 812 Query 699 GAGCCAATTGTGATACCGCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCTTACCCTCGT 758 ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 813 GAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGT 872 Query 759 AAGTTTGGGAACGAGGCAGATCAAACAAGTGGATCGGTTTCTCCCTCAGAACGTGACAAC 818 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 873 AAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATA-C 931 Query 819 -CAATCTCCAACCTCTGTGTTGTCCACTCTTGGATCAGAAGCATTGGGTTCCCTTGATTC 877 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 932 TCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTC 991 Query 878 GAGTTCACCCAATCGAAGCTTGTCCCCAGTATCTTCTGCATCACCACCAGCTGCTCTTAC 937 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 992 GAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTAC 1051 Query 938 AACTACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCAAGAGA 997 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1052 AACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGA 1111 Query 998 GAGACTCTTAAATAGAGAGAGCTCAATCAAGGAACCAACGAAGCAAAGCCTTAAACTCTT 1057 |||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1112 GAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTT 1171 Query 1058 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACTTA 1117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1172 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATA 1231 Query 1118 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAAACATTACCAAT 1177 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || Sbjct 1232 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCAT 1291 Query 1178 TATAAGAAACTCACAAGAAGAGCTCTTGAGTTGTTGGATACAAGTCCCTCTTAAGCAAGA 1237 |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| Sbjct 1292 AATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGA 1351 Query 1238 AGATGTGGAAAATAGATGTTTAGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1297 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1352 AGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1411 Query 1298 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACTGACAAGACCTCAGAACCCGA 1357 ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| Sbjct 1412 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGA 1471 Query 1358 AACAATGGTATGTCAATGGGAGTTTAAACCAAGCGAAAGGTCTGCATTTTCTGAGCTAAG 1417 ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 1472 AACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAG 1531 Query 1418 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCGTACaagaagagaaagatggt 1477 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1532 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGT 1591 Query 1478 aacagaagaagaagaagaa-gagaTTCGTCTCCACTTATAACACATTTTCTCAGGTACCC 1536 ||||||||||||||| | | ||||||| ||||||||||||||||||||||| | |||||| Sbjct 1592 AACAGAAGAAGAAGA-GCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCC 1650 Query 1537 TAAAGAAGAGACCT-AAGtgtt-c-at-caat-g--tat-t---ttttg-t---tgttat 1581 |||||||||||| | || | || | || || | | | | | |||| | ||| || Sbjct 1651 TAAAGAAGAGACTTTAAAT-TTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAAT 1709 Query 1582 t---gttgttgtttcattgttttctcc-gaggggtttgttgtttAGGCTAAAATTTTCTG 1637 | |||||||||||||||||||||| |||| ||||||| | ||||||||||||||||| Sbjct 1710 TTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTG 1769 Query 1638 CAAAA-TTTGTAACTGTAAAATTCGTGTACAAttttttttACAGTTAA-TCTAGTGATTA 1695 ||||| ||||||||||||||| ||||||||||||| | |||||||| |||| |||||| Sbjct 1770 CAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTAT---ACAGTTAAATCTAATGATTA 1826 Query 1696 TGAGATC 1702 ||||||| Sbjct 1827 TGAGATC 1833 Score = 169 bits (91), Expect = 1e-40 Identities = 120/133 (90%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 139 AAAGCTCCGTTTTGCTGGTAA---TTTTTTCCGGAAGGTGGAAGCTTTAGATTGGTTCTG 195 ||| ||| | |||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct 207 AAATCTCTGGTTTGCTGG-AAGTTTTTTTTCCGGAAGGTGGAAGC-TTAGATTGGTTCTG 264 Query 196 ATTTCAGAAGCAAATCGTTTGTTTTTACCTAAATAAATCGAATCAATTTATGGGATCTAT 255 ||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| Sbjct 265 ATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTAT 324 Query 256 AGAAACAGA-GGA 267 ||||||||| ||| Sbjct 325 AGAAACAGACGGA 337 Score = 156 bits (84), Expect = 8e-37 Identities = 119/136 (88%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 1 TTCTCTCTGCTTTCTTCTTCCTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 60 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 31 TTCTCTCTGTTTTCTTCTTCTTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 90 Query 61 CGAGCATAG-TTCTCGGAGAATCTCTGAGAGTCTCATTTTCGACCTTCTTCTTATCTTTC 119 | | || | ||||||||| ||||||||||| |||||| |||||||||||||||| || Sbjct 91 CTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTA 150 Query 120 TCTGCAGCGAGAGTTT 135 | ||| || ||| ||| Sbjct 151 TTTGCGGCAAGA-TTT 165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84136113420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5