BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488595

Length=1702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily prot...  2065    0.0  


> AT5G17300.1 | Symbols: RVE1 | Homeodomain-like superfamily protein 
| chr5:5690227-5692902 REVERSE LENGTH=1839
Length=1839

 Score = 2065 bits (1118),  Expect = 0.0
 Identities = 1343/1447 (93%), Gaps = 34/1447 (2%)
 Strand=Plus/Plus

Query  282   TTTCCTTTTCTGCGTTCCAGACC-TTCGAGtttttttttGTTTTCCTCCGGCGAGATCTT  340
             |||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct  395   TTTCCTTTTCTGTGTTCCACACCTTTCGAGTTTTTTTTTGTTTTCCTCCGCCGAGATCTT  454

Query  341   TATCCGGGAAGTTATGACGTCGTCTACGTTGACTGCGAATGTTCA-GGT-CTGGTCTCCT  398
              ||||||||||||||| |||||||| |||||||||| |||||||| ||| |    |  ||
Sbjct  455   AATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTAC-CAAC-GCT  512

Query  399   CCTTCGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT  458
              ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513   TCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT  572

Query  459   TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAACCATACACGATAACAAAAGAAAGA  518
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  573   TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGA  632

Query  519   GAGAGATGGACAGATGAAGAGCATAAGAAGTTTGTCGAAGCCTTGAAATTGTACGGGCGA  578
             ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct  633   GAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGA  692

Query  579   GCATGGAGGCGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT  638
             || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  693   GCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT  752

Query  639   GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA  698
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  753   GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA  812

Query  699   GAGCCAATTGTGATACCGCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCTTACCCTCGT  758
             ||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  813   GAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGT  872

Query  759   AAGTTTGGGAACGAGGCAGATCAAACAAGTGGATCGGTTTCTCCCTCAGAACGTGACAAC  818
             |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct  873   AAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATA-C  931

Query  819   -CAATCTCCAACCTCTGTGTTGTCCACTCTTGGATCAGAAGCATTGGGTTCCCTTGATTC  877
              ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  932   TCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTC  991

Query  878   GAGTTCACCCAATCGAAGCTTGTCCCCAGTATCTTCTGCATCACCACCAGCTGCTCTTAC  937
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  992   GAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTAC  1051

Query  938   AACTACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCAAGAGA  997
             ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  1052  AACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGA  1111

Query  998   GAGACTCTTAAATAGAGAGAGCTCAATCAAGGAACCAACGAAGCAAAGCCTTAAACTCTT  1057
             |||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  1112  GAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTT  1171

Query  1058  TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACTTA  1117
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1172  TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATA  1231

Query  1118  TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAAACATTACCAAT  1177
             |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct  1232  TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCAT  1291

Query  1178  TATAAGAAACTCACAAGAAGAGCTCTTGAGTTGTTGGATACAAGTCCCTCTTAAGCAAGA  1237
              |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct  1292  AATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGA  1351

Query  1238  AGATGTGGAAAATAGATGTTTAGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC  1297
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1352  AGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC  1411

Query  1298  TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACTGACAAGACCTCAGAACCCGA  1357
             ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct  1412  TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGA  1471

Query  1358  AACAATGGTATGTCAATGGGAGTTTAAACCAAGCGAAAGGTCTGCATTTTCTGAGCTAAG  1417
             ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct  1472  AACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAG  1531

Query  1418  AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCGTACaagaagagaaagatggt  1477
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1532  AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGT  1591

Query  1478  aacagaagaagaagaagaa-gagaTTCGTCTCCACTTATAACACATTTTCTCAGGTACCC  1536
             ||||||||||||||| | | ||||||| ||||||||||||||||||||||| | ||||||
Sbjct  1592  AACAGAAGAAGAAGA-GCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCC  1650

Query  1537  TAAAGAAGAGACCT-AAGtgtt-c-at-caat-g--tat-t---ttttg-t---tgttat  1581
             |||||||||||| | || | || | || || | |  | | |   ||||  |   ||| ||
Sbjct  1651  TAAAGAAGAGACTTTAAAT-TTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAAT  1709

Query  1582  t---gttgttgtttcattgttttctcc-gaggggtttgttgtttAGGCTAAAATTTTCTG  1637
             |   ||||||||||||||||||||||  |||| ||||||| | |||||||||||||||||
Sbjct  1710  TTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTG  1769

Query  1638  CAAAA-TTTGTAACTGTAAAATTCGTGTACAAttttttttACAGTTAA-TCTAGTGATTA  1695
             ||||| ||||||||||||||| ||||||||||||| |   |||||||| |||| ||||||
Sbjct  1770  CAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTAT---ACAGTTAAATCTAATGATTA  1826

Query  1696  TGAGATC  1702
             |||||||
Sbjct  1827  TGAGATC  1833


 Score =  169 bits (91),  Expect = 1e-40
 Identities = 120/133 (90%), Gaps = 6/133 (5%)
 Strand=Plus/Plus

Query  139  AAAGCTCCGTTTTGCTGGTAA---TTTTTTCCGGAAGGTGGAAGCTTTAGATTGGTTCTG  195
            ||| ||| | |||||||| ||   ||||||||||||||||||||| ||||||||||||||
Sbjct  207  AAATCTCTGGTTTGCTGG-AAGTTTTTTTTCCGGAAGGTGGAAGC-TTAGATTGGTTCTG  264

Query  196  ATTTCAGAAGCAAATCGTTTGTTTTTACCTAAATAAATCGAATCAATTTATGGGATCTAT  255
            ||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||
Sbjct  265  ATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTAT  324

Query  256  AGAAACAGA-GGA  267
            ||||||||| |||
Sbjct  325  AGAAACAGACGGA  337


 Score =  156 bits (84),  Expect = 8e-37
 Identities = 119/136 (88%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  1    TTCTCTCTGCTTTCTTCTTCCTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG  60
            ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  31   TTCTCTCTGTTTTCTTCTTCTTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG  90

Query  61   CGAGCATAG-TTCTCGGAGAATCTCTGAGAGTCTCATTTTCGACCTTCTTCTTATCTTTC  119
            | | || |  |||||||||  ||||||||||| |||||| |||||||||||||||| || 
Sbjct  91   CTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTA  150

Query  120  TCTGCAGCGAGAGTTT  135
            | ||| || ||| |||
Sbjct  151  TTTGCGGCAAGA-TTT  165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 84136113420


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5