BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488627
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17600.1 | Symbols: | RING/U-box superfamily protein | chr5... 1674 0.0
AT3G03550.1 | Symbols: | RING/U-box superfamily protein | chr3... 224 2e-57
> AT5G17600.1 | Symbols: | RING/U-box superfamily protein | chr5:5799905-5801244
REVERSE LENGTH=1340
Length=1340
Score = 1674 bits (906), Expect = 0.0
Identities = 1208/1345 (90%), Gaps = 55/1345 (4%)
Strand=Plus/Plus
Query 1 GCCCAAAGATAAGGAGAGAAAGAGAGAGTGACACTTCACCACACCAtct-c-ctctct-- 56
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 GCCCAAAGATAAGGAGAGAAAGAGAGAGTGACACTTCACCACACCATCTCCTCTCTCTCC 60
Query 57 ctcttcttc-t--tc--t-tctttctctgcttctGCAACACAAAAACACCA-T--CAA-G 106
||||||||| | || | |||||||||| ||||||||||||||||||||| | ||
Sbjct 61 CTCTTCTTCTTCCTCTTTCTCTTTCTCTGTTTCTGCAACACAAAAACACCATTGAGAACC 120
Query 107 AATC-AAATG-C--CAAACCCTAATCCATGGTCACCATACGATTCCTCCTACAACGATTG 162
|||| ||||| | |||||||||| ||||||||||||||||| | || ||||| |||||
Sbjct 121 AATCAAAATGTCGACAAACCCTAACCCATGGTCACCATACGA-T--TCATACAATGATTG 177
Query 163 CTCTCAAGGAATCTGCAACATCTACTGTCCTCAATGGTGTTACCTAAtcttccctcctcc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTCTCAAGGAATCTGCAACATCTACTGTCCTCAATGGTGTTACCTAATCTTCCCTCCTCC 237
Query 223 tcctccttctttcttcctcgacgacgactcttcctcctcctcctccagtttctctcctct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCCTCCTTCTTTCTTCCTCGACGACGACTCTTCCTCCTCCTCCTCCAGTTTCTCTCCTCT 297
Query 283 cctcatcgctctcATCGGAATCTTAACCAGCGC-CTTCATCCTCGTCAGCTACTACACTC 341
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 298 CCTCATCGCTCTCATCGGTATCTTAACCAGCGCTCT-CATCCTCGTCAGCTACTACACTC 356
Query 342 TCATCTCCAAGTACTGTCATCGCCACCACCAAACCTCCTCTTCAGAGACTCTTAACC-A- 399
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 357 TCATCTCAAAATACTGTCATCGCCACCACCAAACCTCCTCTTCAGAAACTCTTAACCTAA 416
Query 400 -T-A-A-CAGTGACGGTTTCTTCTCCTCCACGCAAAGAACCTCTGCGACTGGAGATGGAC 455
| | | | |||| |||||||| |||||||||||||||| ||| ||| |||||||||||
Sbjct 417 ATCATAACGGTGAGGGTTTCTTTTCCTCCACGCAAAGAATCTCCACGAATGGAGATGGAC 476
Query 456 TCAACGACTCTATGATTAAATCAATCACAGTTTATAAATACAAGAAA-GGAGATGGATTC 514
|||| || || ||||||||||||||||| |||||||| || || || ||||||||||||
Sbjct 477 TCAATGAGTCCATGATTAAATCAATCACTGTTTATAAGTATAA-AAGTGGAGATGGATTC 535
Query 515 GTCGATGGTTCTGATTGCTCTGTTTGTTTGAGTGAATTTGAAGAAAACGAGAGTTTGAGA 574
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 536 GTTGATGGTTCAGATTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAAACGAGAGTTTGAGA 595
Query 575 TTGTTGCCGAAATGTAATCACGCGTTTCATCTTCCTTGTATTGATACTTGGTTGAAATCT 634
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 TTGTTGCCGAAATGTAACCACGCGTTTCATCTTCCTTGTATTGATACTTGGTTAAAATCT 655
Query 635 CACTCTAATTGTCCACTTTGCCGCGCTTTTGTCACCGGAGTTAATAATCCCACCGCCGCC 694
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 656 CACTCTAATTGTCCACTTTGCCGCGCTTTCGTCACCGGAGTTAATAATCCCACCGCCTCC 715
Query 695 GTCGGCGAGGCTGGTTCAGTTGTTGTAGCTAACCAATCGAGTTCCGTTCATCAACCCGGT 754
|||||| || || |||||| ||||||||||||||||||| ||| | ||||||| |||||
Sbjct 716 GTCGGCCAGAATGTTTCAGTCGTTGTAGCTAACCAATCGAATTCTGCTCATCAAACCGGT 775
Query 755 TCGGTATCCGAAATCAATTTGAATTTGGCCGGTTACCAACA-CCAAACCGGCGATTTTGA 813
|||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||
Sbjct 776 TCGGTATCTGAAATCAATTTGAATTTGGCCGGTTATGAA-AGCCAAACCGGTGATTTTGA 834
Query 814 TTCCGTTGTTGTAATTGAAGATCTGGAAATTGGTTCTCCGAATAGTGACGGTAGATCGGA 873
||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 835 TTCCGTTGTTGTAATCGAAGATCTGGAAATTGGATCTCGGAATAGTGACGCTAGATCGGA 894
Query 874 ATTACTACCAGTGGAGGAGCGACGGGACTCTAAGGATGAAGATTCGCTGCCGATTCGGAG 933
||| | || | ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 895 ATTGCAACTACCGGAGGAGAGACGGGAGACTAAGGATGAAGATTCGCTGCCGATTCGGAG 954
Query 934 ATCTGTATCGTTGAACTCGGGTGTAGTGGGTGTTTCGATTGCTGATGTATTGCGAGAGAT 993
|||||||||||||||||| |||||||||| | || |||||||||||||| ||||||||||
Sbjct 955 ATCTGTATCGTTGAACTCTGGTGTAGTGG-T-TT-CGATTGCTGATGTACTGCGAGAGAT 1011
Query 994 CGAAGACGAAGAAGAAGAAGAATCCGGCGGTGTTGGAACTTCGCAGCGGCGACAGGAAGG 1053
||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1012 TGAAGACGAAGAAG--GA-GAATCCGGCGGAGTTGGAACTTCGCAGCGGCGAGAGGAAGG 1068
Query 1054 GGAAGATGGCGATGGGAAGACGCTTCCACCGACGGAGGCGAATCAGAGAAGCGGCGGAGT 1113
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1069 GGAAGATGGCGATGGGAAGACGATTCCACCGACGGAGGCGAATCAGAGAAGCGGCGGAGT 1128
Query 1114 ATCGAATTTTCTGGTACGGAGTTTATCGACGGGAAGATTTATTTTCTCGAGGTATGATCG 1173
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTCGGGTTTTTTTGTACGGAGTTTATCGACGGGAAGATTTATTTTCTCGAGGTATGATCG 1188
Query 1174 AGGGCGAAATTACCGTTTACCCAATTAAAT-TAACTGttttt----ttt--t-ttttctt 1225
|||||||||||||||| | ||| ||| | |||| | ||| ||| | |||| ||
Sbjct 1189 AGGGCGAAATTACCGTCTGCCCCTTTAG-TGTAACAGAATTTCAAATTTACTGTTTTGTT 1247
Query 1226 tct-t-tttACTG-TA---TT-TACTGATAAATAATAGTGAATTAGTGATTTCTTTTTGA 1278
|| | ||||||| || || ||| | | | ||||||||||||||||||||||||||||
Sbjct 1248 ACTGTATTTACTGATAAAATTATACAGCTCACTAATAGTGAATTAGTGATTTCTTTTTGA 1307
Query 1279 AGGCTGAGAAAAAGTGATGATTATT 1303
|||||||||||||||||||||||||
Sbjct 1308 AGGCTGAGAAAAAGTGATGATTATT 1332
> AT3G03550.1 | Symbols: | RING/U-box superfamily protein | chr3:850108-851590
REVERSE LENGTH=1483
Length=1483
Score = 224 bits (121), Expect = 2e-57
Identities = 224/271 (83%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 118 AAACCCTAATCCAT--GGT-CACCATACGATTCCTCCTACA-ACGATTGCTCTCAAGGAA 173
|||||||||||||| ||| || ||||||| | || |||| | || || |||||||||
Sbjct 144 AAACCCTAATCCATGGGGTACAACATACGA-T--TCATACAGA-GACTGTTCTCAAGGAG 199
Query 174 TCTGCAACATCTACTGTCCTCAATGGTGTTACCTAAtcttccctcctcctcc-tccttct 232
| |||| |||| || ||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 200 TATGCAGTGTCTATTGCCCTCAATGGTGTTACGTCATCTTCCCTCCTCCTCCTTCCTTCT 259
Query 233 ttcttcctcgacgacgac-tcttcctcctcctcctccagtttctctcctctcctcatcgc 291
|| || |||||| ||| | || ||||||| || | |||||||||||||||||||||
Sbjct 260 ATC-TCGACGACGAAGACGAC-TCTTCCTCCT-CT-GA-TTTCTCTCCTCTCCTCATCGC 314
Query 292 tctcATCGGAATCTTAACCAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATCTCCAA 351
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCTCATCGGAATCCTCGCTAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATCTCCAA 374
Query 352 GTACTGTCATCGCCACCACCA-AACCTCCTC 381
||||| || |||| | ||| ||| |||||
Sbjct 375 ATACTGCCACCGCCGTCGCCACAAC-TCCTC 404
Score = 217 bits (117), Expect = 3e-55
Identities = 187/220 (85%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 445 TGGAGATGGACTCAACGACTCTATGATTAAATCAATCACAGTTTATAAATACAAGAAAGG 504
||| ||||||||| | || ||| |||||||||| || || ||||| |||||| ||||| |
Sbjct 519 TGGCGATGGACTCGATGAATCTCTGATTAAATCGATAACTGTTTACAAATAC-AGAAA-G 576
Query 505 A--GATGGATTCGTCG-ATGGTTCTGATTGCTCTGTTTGTTTGAGTGAATTTGAAGAAAA 561
| |||||||| || | || ||| ||||||||||||||||| || || ||| |||| ||
Sbjct 577 ATGGATGGATTTGTTGAAT-CTTCAGATTGCTCTGTTTGTTTAAGCGAGTTTCAAGAGAA 635
Query 562 CGAGAGTTTGAGATTGTTGCCGAAATGTAATCACGCGTTTCATC-TTCCTTGTATTGATA 620
|||||| ||||||||||| || ||||| || ||||||||||| | |||||||||||||||
Sbjct 636 CGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCA-CGTTCCTTGTATTGATA 694
Query 621 CTTGGTTGAAATCTCACTCTAATTGTCCACTTTGCCGCGC 660
|||||||||||||||||||||||||||| || ||||||||
Sbjct 695 CTTGGTTGAAATCTCACTCTAATTGTCCTCTCTGCCGCGC 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5