BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488628
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 715 0.0
> AT5G17610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:5803936-5805295 FORWARD LENGTH=691
Length=691
Score = 715 bits (387), Expect = 0.0
Identities = 454/484 (94%), Gaps = 14/484 (3%)
Strand=Plus/Plus
Query 1 CTGGAACTAGCCACTGCGATCGGAGAAGAAACAAGCTCGAGTGTCTCGAGAGACGCCATG 60
|||||||||||||||||||||||||||| || || | | ||||||||||||||||
Sbjct 29 CTGGAACTAGCCACTGCGATCGGAGAAG-AA-AA-----A--G-CTCGAGAGACGCCATG 78
Query 61 GAAAATTCCCGAGCTCGTTCAAGCTTCGTTTG---TCTTCTTCTGTTACTCTCTATGTGT 117
|||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 79 GAAATTTCCCAAGCTCGTTCAAGCTTCGTTTGTCTTCTTCTTCTGTTACTCTCCATGTGT 138
Query 118 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCCATCTCCGATGTAGAAATCAGGCAG 177
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 139 TTCGTTCCCTGCGTCTTTTCCAAATCTCCTCGTCCTATCTCCGATGTGGAGATCAGGCAG 198
Query 178 AAGAAGAGCGAATGCTACGCTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 237
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AAGAAGAGCGAATGCTACGGTGATATAGAGAGTGGGTTATGGGGTTGGCAATGCAAATCT 258
Query 238 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TCTGCAATAGCGAAAGAGAATTGTGCGCTGCGATGCCTTTCTCCGGTTTGCTATCAACTC 318
Query 298 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATTTATGAGAGTGATCCGCTTGAAGAAGGTGAAAAAGATTTGATTAGGAGCCAAGAGTAC 378
Query 358 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGACGGTGTCCGAGGCAGCTTT 417
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 379 AAGTATTGTATGTACAAGTCATCACTCGGGGAAAGCTTAGAGGGTGTTCGAGGCATCTTT 438
Query 418 TGATGGTA-CAAAGAAAAGTTTCTCAATGAAGACATTTGCCAAAAGCTGAGCTAAGCTCT 476
|||||||| |||| || | ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 439 TGATGGTATCAAATAAGACTTTCTCAGTGAAGACATTTGCCAAAATCTGAGCTAAGCTCT 498
Query 477 CGAA 480
|||
Sbjct 499 TGAA 502
Score = 152 bits (82), Expect = 3e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 478 GAAGCCATGTAAGGCTTCTTTTGTTATAAACCTCAATTTTTGCGTTAATGGTTGTTTATA 537
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 537 GAAGCCATGTAAGGCTTCTTTTATTATAAACCTCAATTTTTGGGTTAATGGTTGTTTATA 596
Query 538 TGAAACGTTTACGTTTATGATTGGCAAA 565
||||||||||||||||||||||||||||
Sbjct 597 TGAAACGTTTACGTTTATGATTGGCAAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5