BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488653

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17870.1 | Symbols: PSRP6 | plastid-specific 50S ribosomal p...   601    2e-171


> AT5G17870.1 | Symbols: PSRP6 | plastid-specific 50S ribosomal 
protein 6 | chr5:5907775-5908335 FORWARD LENGTH=561
Length=561

 Score =  601 bits (325),  Expect = 2e-171
 Identities = 378/402 (94%), Gaps = 9/402 (2%)
 Strand=Plus/Plus

Query  1    AAGATAAGGAAACAATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTCGCTG  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  29   AAGATAAGGAAACCATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTTGCTG  88

Query  61   CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCGAAATTGGGTAATGGAGGAGGATTAGGGA  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  89   CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCAAAATTGGGTAATGGAGGAGGATTAGGGA  148

Query  121  TGGTGATTGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGTCGA  180
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  149  TGGTGATAGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGACGA  208

Query  181  GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTATGCTCCTCTTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  209  GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTACGCTCCTCTTC  268

Query  241  CTCCTCTTCCGGCGGAATGGACTCCGTAT-ACTCTTGCTTCTGACGACGGTGGTGCCGCC  299
            ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| |||
Sbjct  269  CTCCTCTTCCGGCGGAATGGAGTCCGT-TCACTCTCGCTTCTGACGACGGTGGTGCTGCC  327

Query  300  GCCGCTTCTCCTGCCGGAGATTTGGTTTCAGGCGCTGCCTAGTTA-TATGAGTTATCTGC  358
             | ||| |    |  |||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  328  ACTGCTGC----G--GGAGATTTGGTTTCAGGCGCTGCCTAGTTGGTATGAGTTATCTGC  381

Query  359  TGGTTTGGTTGTAATCTAgtttgagaacttttgttggtgttt  400
            || ||||||||||||||||||||||||||||||||| |||||
Sbjct  382  TGATTTGGTTGTAATCTAGTTTGAGAACTTTTGTTGTTGTTT  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5