BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488653 Length=461 Score E Sequences producing significant alignments: (Bits) Value AT5G17870.1 | Symbols: PSRP6 | plastid-specific 50S ribosomal p... 601 2e-171 > AT5G17870.1 | Symbols: PSRP6 | plastid-specific 50S ribosomal protein 6 | chr5:5907775-5908335 FORWARD LENGTH=561 Length=561 Score = 601 bits (325), Expect = 2e-171 Identities = 378/402 (94%), Gaps = 9/402 (2%) Strand=Plus/Plus Query 1 AAGATAAGGAAACAATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTCGCTG 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 29 AAGATAAGGAAACCATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTTGCTG 88 Query 61 CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCGAAATTGGGTAATGGAGGAGGATTAGGGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 89 CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCAAAATTGGGTAATGGAGGAGGATTAGGGA 148 Query 121 TGGTGATTGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGTCGA 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 149 TGGTGATAGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGACGA 208 Query 181 GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTATGCTCCTCTTC 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 209 GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTACGCTCCTCTTC 268 Query 241 CTCCTCTTCCGGCGGAATGGACTCCGTAT-ACTCTTGCTTCTGACGACGGTGGTGCCGCC 299 ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| ||| Sbjct 269 CTCCTCTTCCGGCGGAATGGAGTCCGT-TCACTCTCGCTTCTGACGACGGTGGTGCTGCC 327 Query 300 GCCGCTTCTCCTGCCGGAGATTTGGTTTCAGGCGCTGCCTAGTTA-TATGAGTTATCTGC 358 | ||| | | ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 328 ACTGCTGC----G--GGAGATTTGGTTTCAGGCGCTGCCTAGTTGGTATGAGTTATCTGC 381 Query 359 TGGTTTGGTTGTAATCTAgtttgagaacttttgttggtgttt 400 || ||||||||||||||||||||||||||||||||| ||||| Sbjct 382 TGATTTGGTTGTAATCTAGTTTGAGAACTTTTGTTGTTGTTT 423 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21967006313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5