BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488679
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18130.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1633 0.0
> AT5G18130.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G03870.2);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5995480-5997498 FORWARD LENGTH=1330
Length=1330
Score = 1633 bits (884), Expect = 0.0
Identities = 1034/1103 (94%), Gaps = 24/1103 (2%)
Strand=Plus/Plus
Query 1 AGAGAAACCACTTCGAAACGATGAGAGAGATAGGTCTCTCCTCAAAATTACCAAACAC-A 59
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1 AGAGAAACCACTTCGCAACGATGAGGGAGATAGGTCACTCCTCAAAATTACCAAACACAA 60
Query 60 ATTAGCTCCAATAACTGAAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAACCCTA 119
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATTAGCTCCAATAATTGCAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAGCCCTA 120
Query 120 ATCCGAGAAATCAATCAACAACAACTCGAAGGAGATGGATCTAGAAGATTGGGAAATACT 179
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCGAGAAATCATTCGACAACAACACGAAGGAGATGGATCTAGAAGATTGGGAAATACT 180
Query 180 CCCCAGAAA-CATCTACAAGGGTCTCGATCTTGATCTCGGTCATGACGAGGATCATGAAG 238
||||| ||| || ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 181 CCCCA-AAATCAACTACAAGGGTCTCGAACTTGATCTCGGTCATGAAGAGGATCATGAAG 239
Query 239 CTACGAAGATGATGAGAAACACCGGAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 298
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTACGAAGATGATGAGAAACACCGCAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 299
Query 299 TTCAAGATTCTGTCGGAAAAACAGAGCTTCTTCATCATAGATCTAGCGTGGTCCCCACAC 358
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 300 TTCAAGATTCTGTCGGAAAGACAGAGTTTCTTCATCAGAGATCTAGCGTGGTCCCCACAC 359
Query 359 AACTCCTCCAAATTCCCATAACTTGGGAACCTTTATCCCCCGTGGACGACAACAAAGATC 418
|||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 360 AACTCCTCCAGATTCCAATAACTTGGGAACCTTTGTCCCCCGTGGACG---ACAAAGATC 416
Query 419 ACAAGAAGTACCCGGATCCGGATTTCTCGGAACCAGACCCGGAACTGTTGACGGAGTCTC 478
|||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 ACAATAAGTACCTGGATCCGGATTTCTCGGAACCAGACCCGGAACTTTTGACGGAGTCTT 476
Query 479 TTCCGTCGCCGAGAATAACCTTCAAGAAAACGAAGGAAACCGAATTTGCCGACATGAAAA 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 TTCCGTCGCCGAGAATAACCTTCAAGAAATCGAAGGAAACCGAATTTGCCGACATGAAAA 536
Query 539 TAGATTCACCAGCAGCGAGGCTCACGAGTCCTCTGCCTCAGAACGATGAGAAACACTCTG 598
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||
Sbjct 537 TAGATTCACCAGCAGCGAGGTTCACTAGTCCTCTGCCGCAGAACGATGAGAGACACTCTG 596
Query 599 ACTCAGAAGGAGGGTTAGGAGGAGAGTCCTATGATGAGATCATGGGATCAGAGGTTGAAG 658
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 ACTCAGAAGGAGGGTTAGGAGGAGAGTCTTATGATGAGATCATGGGATCAGAGGTTGAAG 656
Query 659 AAGGTAGTGACTTGAGGAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAAAATGAATC 718
|| | ||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 657 AAAGCAGTGACTTGAGTAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAGAACGAATC 716
Query 719 TGTGGAAAAAAGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 778
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGTGGAAGAAGGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 776
Query 779 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 836
Query 839 AGAACCAAATCTTAAGGTTTCAGATTTACTCTGATGATAATAAGCGAATGAACGAGGTAG 898
||||||| ||| | ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 837 AGAACCAGATCCTCAGGTTCCAGATTTACTCTGATGATAATAAGCGGATGAACGAGGTAG 896
Query 899 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 956
Query 959 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAAACATAGCCATAACTGAAT 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 957 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAATCATAGCCATA--T-A-- 1011
Query 1019 CAGCACATCAGATCCAATGTCTTCTGCTTAATCACCAATGGGTTTTATAGCTTATGTATT 1078
|| ||| |||||||||||||||||||||||| || | | ||||||||||||||
Sbjct 1012 --GC-CAT-AGATCCAATGTCTTCTGCTTAATCGCC--TC--T---ATAGCTTATGTATT 1060
Query 1079 TACGAATTTAG-AATATTCAATA 1100
||||||||||| || ||||||||
Sbjct 1061 TACGAATTTAGGAA-ATTCAATA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5