BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488683
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18170.1 | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:... 2183 0.0
AT3G03910.1 | Symbols: GDH3 | glutamate dehydrogenase 3 | chr3:... 1334 0.0
> AT5G18170.1 | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006039-6008472
FORWARD LENGTH=1593
Length=1593
Score = 2183 bits (1182), Expect = 0.0
Identities = 1394/1490 (94%), Gaps = 40/1490 (3%)
Strand=Plus/Plus
Query 1 ATCACACTGACACCAATCTTCTTCTTTTAACAGTCTTTTTATTACAGCGTTCTGATC--a 58
|||| |||||||||||||||| || |||||||||| ||||||||||||||||||||| |
Sbjct 3 ATCAGACTGACACCAATCTTCCTC-TTTAACAGTCGTTTTATTACAGCGTTCTGATCAAA 61
Query 59 a----a---aaag-t---ag---acagagagaaagaagaaaagaagaagaagaagaagaa 104
| | |||| | || ||||||||||| || ||||||||||||||||| |||
Sbjct 62 ACTCCAGTGAAAGTTCAAAGTACACAGAGAGAAACAAAAAAAGAAGAAGAAGAAGTTGAA 121
Query 105 gaagaagaagCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GAAGAAGAAGCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 181
Query 165 CTTCTTGGTTTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 224
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 241
Query 225 GTGGAATGTACCATACCGAAAGACGATGGGACACTAGCATCATTCGTTGGGTTTAGAGTT 284
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 242 GTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAGAGTT 301
Query 285 CAACACGACAATGCAAGAGGTCCCATGAAAGGCGGAATCAGATATCATCCCGAGGTTGAT 344
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 302 CAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGTTGAT 361
Query 345 CCGGATGAAGTGAACGCACTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 404
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 421
Query 405 CCATACGGAGGAGCCAAAGGAGGGATTGGTTGTGATCCGAGCAAGCTCAGTATATCCGAG 464
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 422 CCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTCCGAG 481
Query 465 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATTGGGATTCAGACT 524
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 482 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCATACT 541
Query 525 GATGTTCCTGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAG 584
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAA 601
Query 585 TACTCTAAGTTCCATGGATATTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 644
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 602 TACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 661
Query 645 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGAACCGAAGCTTTG 704
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 662 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTG 721
Query 705 CTTAACGAGCACGGCAAGAGCATATCGGGGCAGCGTTTTGTCATCCAGGGATTTGGGAAT 764
|||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 722 CTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGGGATTTGGTAAT 781
Query 765 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCGGTGAGT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 782 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCGTGAGT 841
Query 825 GACATTACCGGAGCAATCAAGAATAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 884
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 842 GACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 901
Query 885 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGACGGTGCAGATTCGATCGATCCAAACTCC 944
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 902 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCAAACTCC 961
Query 945 ATACTGGTCGAGGATTGCGATATCCTCGTCCCTGCAGCACTTGGCGGTGTCATCAACAGG 1004
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 962 ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGG 1021
Query 1005 GAAAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCTGCTAATCATCCAACTGAT 1064
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1022 GAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGAT 1081
Query 1065 CCGGACGCGGATGAGATCTTGAGTAAGAAAGGTGTGGTAATTCTCCCAGACATATATGCA 1124
|||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1082 CCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCA 1141
Query 1125 AACTCTGGAGGAGTCACTGTCAGTTACTTCGAATGGGTCCAGAACATTCAAGGGTTTATG 1184
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1142 AACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAGGCTTTATG 1201
Query 1185 TGGGAGGAAGAGAAGGTGAACGAGGAGCTAAAGACTTACATGACTCGCTCATTCAAGGAC 1244
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1202 TGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTTTCAAGGAC 1261
Query 1245 TTGAAAGAGATGTGCAAAACTCACTCCTGCGATCTCCGGATGGGAGCTTTCACACTAGGT 1304
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1262 TTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCACACTCGGT 1321
Query 1305 GTTAATCGTGTGGCTCAGGCTACCATTCTCAGAGGCTGGGGAGCTTAA-GATTATCTAAT 1363
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1322 GTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGGAGCTTAAAGATTATCTAAT 1381
Query 1364 CT---A-GC--TC-CT---G-A-------A-TAA-AACGG-GCCAACCTTTAATCCACTT 1402
|| | || || || | | | ||| || | ||||| |||||||| ||||
Sbjct 1382 CTCTTATGCAATCTCTTTAGCAGCTCCTGAATAAGAATTGAGCCAAACTTTAATCTACTT 1441
Query 1403 TTTGTTTTCTCCTC-TACTTTGGCTTAGAGGTCCTACTGAGTTAACAGAT 1451
|||||||| ||||| |||||||||||||||||| | ||||||||||||||
Sbjct 1442 TTTGTTTTATCCTCCTACTTTGGCTTAGAGGTCATCCTGAGTTAACAGAT 1491
> AT3G03910.1 | Symbols: GDH3 | glutamate dehydrogenase 3 | chr3:1006842-1009018
FORWARD LENGTH=1479
Length=1479
Score = 1334 bits (722), Expect = 0.0
Identities = 1080/1255 (86%), Gaps = 16/1255 (1%)
Strand=Plus/Plus
Query 100 aagaaga-agaag-aagCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAG-TTAG 156
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 53 AAGAAGAGAGAAGAAAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTT-G 111
Query 157 CTGCTAGGCTTCTTGGTTTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAG 216
|| |||||||||||||||| || || ||||||||||||||||||||||| |||||| |||
Sbjct 112 CTTCTAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAG 171
Query 217 AAATCAAGGTGGAATGTACCATACCGAAAGACGATGGGACACTAGCATCATTCGTTGGGT 276
| ||||||||||||||||||||||| ||||||||||| || |||||||| || ||||| |
Sbjct 172 AGATCAAGGTGGAATGTACCATACCAAAAGACGATGGAACTCTAGCATCCTTTGTTGGAT 231
Query 277 TTAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGCGGAATCAGATATCATCCCG 336
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 232 TCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAG 291
Query 337 AGGTTGATCCGGATGAAGTGAACGCACTGGCTCAGCTCATGACATGGAAAACAGCAGTGG 396
||||||| ||||||||||| ||||| ||||||| || ||||||||||||||||||||||
Sbjct 292 AGGTTGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGG 351
Query 397 CTAAGATTCCATACGGAGGAGCCAAAGGAGGGATTGGTTGTGATCCGAGCAAGCTCAGTA 456
||||||| || || ||||||||||||||||| || |||||||| |||||| |||| |||
Sbjct 352 CTAAGATACCTTATGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCGAGCTAAGTC 411
Query 457 TATCCGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATTGGGA 516
| || |||||||| || |||||||||||||||||||||||||| || ||||| |||||||
Sbjct 412 TCTCAGAGCTCGAACGTTTGACTCGAGTTTTCACTCAGAAGATTCACGATCTTATTGGGA 471
Query 517 TTCAGACTGATGTTCCTGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTC 576
|||| ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 472 TTCATACTGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTC 531
Query 577 TTGATGAGTACTCTAAGTTCCATGGATATTCGCCTGCAGTTGTGACTGGAAAACCCATTG 636
||||||| ||||| || ||||||||| |||| ||||| ||||| ||||||||||||||||
Sbjct 532 TTGATGAATACTCAAAATTCCATGGACATTCTCCTGCTGTTGTCACTGGAAAACCCATTG 591
Query 637 ATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGAACCG 696
||||||||||||| || |||||||| || ||||| |||||||||||| |||||| ||| |
Sbjct 592 ATCTTGGTGGATCTCTTGGGAGAGATGCTGCTACAGGAAGAGGAGTGTTGTTTGCAACAG 651
Query 697 AAGCTTTGCTTAACGAGCACGGCAAGAGCATATCGGGGCAGCGTTTTGTCATCCAGGGAT 756
||||||| || ||||| || || |||| |||||| || ||||| || | ||||||||| |
Sbjct 652 AAGCTTTACTCAACGAACATGGAAAGACCATATCTGGACAGCGATTCGCCATCCAGGGCT 711
Query 757 TTGGGAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGA-AAAGGGTGGGAAGATTGTT 815
|||| ||||||||||||||||| || ||| |||||||||| ||||| ||| ||||||||
Sbjct 712 TTGGAAATGTGGGTTCTTGGGCAGCGAAGTTGATAAGTGACAAAGG-TGGTAAGATTGTG 770
Query 816 GCGGTGAGTGACATTACCGGAGCAATCAAGAATAAGGATGGTATCGATATCCCG-GCCTT 874
||||||||||| | || |||||||||||||| || |||| || || ||| | | ||
Sbjct 771 GCGGTGAGTGATGTCACAGGAGCAATCAAGAACAATAATGGAATTGACATCTTGAGT-TT 829
Query 875 GCTCAAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGACGGTGCAGATTCGATCGA 934
|||| ||||| || ||||| ||||||| ||||||||||||| ||||| ||||| |||||
Sbjct 830 GCTCGAGCATGCTGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAATCGA 889
Query 935 TCCAAACTCCATACTGGTCGAGGATTGCGATATCCTCGTCCCTGCAGCACTTGGCGGTGT 994
||| | || || || ||||| ||||| ||||| || ||||||||||| || || || ||
Sbjct 890 TCCTGATTCGATTCTTGTCGAAGATTGTGATATTCTTGTCCCTGCAGCTCTAGGGGGAGT 949
Query 995 CATCAACAGGGAAAATGCGAATGAGATTAAAGC-AAAGTTCATCATAGAAGCTGCTAATC 1053
|||||||||||||||||| || || || ||||| ||| |||||||| |||| ||||||||
Sbjct 950 CATCAACAGGGAAAATGCAAACGAAATAAAAGCCAAA-TTCATCATTGAAGGTGCTAATC 1008
Query 1054 ATCCAACTGATCCGGACGCGGATGAGATCTTGA-GTAAGAAAGGTGTGGTAATTCTCCCA 1112
| ||||||||||| || || || |||||||||| | ||||||||||| | || ||||||
Sbjct 1009 ACCCAACTGATCCTGAGGCTGACGAGATCTTGAAG-AAGAAAGGTGTTATGATCCTCCCA 1067
Query 1113 GACATATATGCAAACTCTGGAGGAGTCACTGTCAGTTACTTCGAATGGGTCCAGAACATT 1172
|| ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1068 GATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGAACATA 1127
Query 1173 CAAGGGTTTATGTGGGAGGAAGAGAAGGTGAACGAGG-AGCTAAAGACTTACATGACTCG 1231
||||| || |||||||| || || |||||||| ||| |||||||||| |||||||||||
Sbjct 1128 CAAGGATTCATGTGGGATGAGGAAAAGGTGAAT-AGGGAGCTAAAGACCTACATGACTCG 1186
Query 1232 CTCATTCAAGGACTTGAAAGAGATGTG-CAAAACTCACTCCTGCGATCTCCGGATGGGAG 1290
| ||||| ||||||||||| ||||| || | | ||||| || |||||||| |||||||
Sbjct 1187 CGGGTTCAAAGACTTGAAAGAAATGTGTCAGA-CGCACTCATGTGATCTCCGTATGGGAG 1245
Query 1291 CTTTCACACTAGGTGTTAATCGTGTGGCTCAGGCTACCATTCTCAGAGGCTGGGG 1345
||||||| || ||| |||||||||| ||||| ||||||| | |||||||||||||
Sbjct 1246 CTTTCACCCTCGGTATTAATCGTGTCGCTCAAGCTACCACTATCAGAGGCTGGGG 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5