BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488691 Length=2971 Score E Sequences producing significant alignments: (Bits) Value AT5G18230.2 | Symbols: | transcription regulator NOT2/NOT3/NOT... 4235 0.0 AT5G28262.1 | Symbols: | other RNA | chr5:10238550-10239773 FO... 174 4e-42 > AT5G18230.2 | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021444-6027249 REVERSE LENGTH=2922 Length=2922 Score = 4235 bits (2293), Expect = 0.0 Identities = 2546/2665 (96%), Gaps = 29/2665 (1%) Strand=Plus/Plus Query 297 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 GATGGGTGCGAGCCGGAAATTACAAGGCGAGATAGATCGGGTGCTGAAGAAGGTTCAAGA 277 Query 357 AGGTGTTGATGTTTTCGACAGCATCTGGAACAA---G---GTATATGATACAGACAATGT 410 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 278 AGGTGTTGATGTTTTCGACAGCATCTGGAACAAGTGGAATGTATATGATACAGACAATGT 337 Query 411 TAACCAAAAGGAAAAGTTCGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 470 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TAATCAAAAGGAAAAGTTTGAGGCGGACTTGAAGAAGGAAATCAAGAAGCTGCAGCGGTA 397 Query 471 TAGAGACCAGATCAAGACTTGGATTCAGTCCAGTGAGATCAAAGATAAGAAAGTCAGTGC 530 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 398 TAGAGACCAGATCAAGACATGGATTCAGTCTAGTGAGATCAAAGATAAGAAAGTCAGTGC 457 Query 531 ATCATATGAGCAATCCCTGGTTGACGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 590 ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 458 ATCTTATGAGCAATCCCTGGTGGATGCTCGGAAGCTTATTGAGAAAGAGATGGAGAGGTT 517 Query 591 TAAGATCTGTGAGAAAGAGACCAAGACAAAAGCTTTTTCCAAGGAAGGACTGGGTCAGCA 650 |||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 518 TAAGATATGTGAAAAAGAGACCAAGACAAAAGCCTTCTCCAAGGAAGGACTGGGTCAGCA 577 Query 651 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTAAACAATGT 710 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 578 ACCTAAAACTGACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGT 637 Query 711 GGTGAGTGAACTGGAGTCACAGATTGATAGCTTTGAAGCTGAATTGGAAGGACTGTCTGT 770 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 638 GGTGAGTGAACTGGAGTCGCAGATTGATAGCTTTGAAGCTGAGTTGGAAGGACTGTCTGT 697 Query 771 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATCACAAGGCA 830 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 698 CAAAAAAGGAAAGACAAGACCGCCCAGATTGACTCATCTTGAGACATCTATTACAAGACA 757 Query 831 CAAGGATCACATAATAAAGCTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 890 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 758 CAAGGATCACATAATAAAGTTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAG 817 Query 891 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 TCCAGAACAAGTAAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGGA 877 Query 951 TGATTTTGACGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 1010 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 TGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGT 937 Query 1011 GGAGGGTCTTGAAGATCTAGTTACTGCTGGCCCTCTTGTCAAGGGTACTCCTTTGAGCAT 1070 |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 938 GGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTGTCAAGGGTACTCCTTTAAGCAT 997 Query 1071 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCATCA 1130 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 998 GAAGAGTTCTTTGGCAGCGTCAGCATCTCAAGTTCGGAGCATAAGTTTGCCAACTCA-C- 1055 Query 1131 TCAGAGTACTTCGCAAGAGAAAACAGAGGATCCATCTTTACCGGATAGCAGTGCTGAGAT 1190 | | | |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1056 -C-----A--T--CAAGAGAAAACAGAGGATACATCTTTACCGGATAGCAGTGCTGAGAT 1105 Query 1191 GGTTCCAAAAACCCCTCCCCCAAAGAATGGCGCAGGCCTTCACTCAGCACCATCAACACC 1250 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1106 GGTTCCAAAAACCCCTCCGCCAAAGAATGGTGCAGGCCTTCACTCAGCACCATCAACACC 1165 Query 1251 TGCCGGGGGACGTCCAAGTTTGAATGTGCCTGCCAGTAATATTTCAAATGCATCAGTTGC 1310 |||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||||||| | Sbjct 1166 TGCCGGAGGACGTCCAAGTTTGAACGTGCCTGCCGGTAATGTTTCAAATACATCAGTTAC 1225 Query 1311 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1226 CTTATCAACTTCTATTCCTACTCAAACTTCCATAGAAAGCATGGGGAGTTTGTCTCCCGT 1285 Query 1371 GACTGCCAAGGAAGAAGACGCAACAACATTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1430 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1286 GGCTGCCAAGGAAGAAGACGCAACAACCTTGCCTTCTCGTAAACCACCCTCATCTGTTGC 1345 Query 1431 TGATACTCCATTGAGGGGCATTGGTAGAGTTAGTATCCCCAACCAGCCCCAACCAAGCCA 1490 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1346 GGATACTCCATTGAGGGGCATTGGTAGAGTTGGTATCCCCAACCAACCCCAACCAAGCCA 1405 Query 1491 GCCTCCGTCTCCAATTCCAGCTAATGGATCTCGCATTAGTGCAACTTCAGCAGCTGAAGT 1550 |||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 1406 GCCTCCGTCTCCTATTCCAGCTAACGGGTCTCGCATTAGTGCAACTTCAGCTGCTGAAGT 1465 Query 1551 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAATGTCCAACCTCTAACTTCTCCACTGAG 1610 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1466 TGCAAAGAGAAATATAATGGGAGTTGAGAGCAACGTCCAACCTCTTACTTCTCCACTGAG 1525 Query 1611 CAAAATGGTATTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGTAACCC 1670 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1526 CAAAATGGTGTTGCCACCAACTGCAAAGGGTAATGATGGAACTGCCTCTGATAGCAACCC 1585 Query 1671 TGGTGATGTTGCGGCTAGTATCGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1730 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1586 TGGTGATGTTGCGGCTAGTATTGGTAGAGCTTTTTCACCATCTATTGTATCTGGTTCGCA 1645 Query 1731 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1646 GTGGAGGCCTGGTAGTCCCTTTCAGAGTCAGAATGAAACGGTTCGTGGGAGAACTGAAAT 1705 Query 1791 AGCACCAGATCAAAGAGAGAAATTTTTACAGAGGTTACAGCAAGTACAGCAAGGCCATGG 1850 ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1706 AGCACCAGACCAAAGAGAGAAATTCTTACAGAGATTACAGCAAGTACAGCAAGGCCATGG 1765 Query 1851 TAACCTCTTAGGCATGCCTTCTCTATCTGGAGGAAATGAGAAGCAGTTTTCTTCACAACA 1910 ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1766 TAACCTCTTAGGCATACCTTCTTTATCTGGAGGAAACGAGAAGCAGTTTTCTTCACAACA 1825 Query 1911 GCAAAATCCTCTATTACAGCAGAGCTCTGCCATTTCTCCTCATGGAAGCTTGGGAATCGG 1970 |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 1826 GCAAAATCCTCTTTTACAGCAGAGCTCTTCCATCTCTCCTCATGGAAGCTTGGGAATCGG 1885 Query 1971 AGTTCAGGCACCAGGTTTTAATGTCATGAATTCTGCCTCCTTACAGCAGCAGTCAAATGC 2030 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1886 AGTTCAGGCACCAGGTTTTAATGTCATGAGTTCTGCCTCCTTACAGCAGCAATCAAATGC 1945 Query 2031 CATGAGTCAACAATTGGGTCAGCAGCCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2090 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1946 CATGAGTCAACAATTGGGTCAGCAACCTTCTGTTGCAGATGTAGACCATGTCAGAAATGA 2005 Query 2091 TGATCAA-CCACAGCAAAACTTACCTGATGATTCAGCTTCCATAACAGCTTCAAAAACTA 2149 ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 2006 TGATCAATCC-CAGCAAAACTTACCTGATGATTCAGCTTCCATAGCAGCTTCAAAAGCTA 2064 Query 2150 TTCAAAATGAGGATGATTCTAAAGTTCTATTTGATACTCCGTCCGGAATGCCCAGCTACA 2209 |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 2065 TTCAAAGTGAGGATGACTCTAAAGTTCTATTTGATACTCCGTCGGGAATGCCCAGCTACA 2124 Query 2210 TGTTGGATACAGTACAGGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCCATACAAC 2269 |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2125 TGTTGGATCCAGTACAAGTATCTAGCGGTCCTGATTTCTCTCCTGGACAACCTATACAAC 2184 Query 2270 CAGGTCAATCTTCAAGTAGCCTTGGGGTCATTGGCCGGAGAAGTAACTCTGAATTAGGAG 2329 | |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 2185 CGGGTCAATCTTCAAGTAGCCTCGGGGTCATTGGACGGAGAAGTAACTCTGAGTTAGGAG 2244 Query 2330 CCATTGGTGACCATTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2389 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2245 CCATTGGTGACCCTTCAGCTGTAGGGCCAATGCATGATCAAATGCACAATCTCCAGATGC 2304 Query 2390 TTGAAGCTGCTTTCTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2449 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2305 TTGAAGCTGCTTTTTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATT 2364 Query 2450 CTCCGAGGAACCCAGCAATCACACCACAAACATTTCCCCAAACACAAGCACCAATCATAA 2509 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2365 CTCCGAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATCATAA 2424 Query 2510 ACAATCCTTTGCTCTGGGAACGTTTAGGCAGCGACGCTTATGGGACGGATACTTTGTTCT 2569 |||| ||||||||||||||||| ||||||||||| |||||||| || ||||||||||||| Sbjct 2425 ACAACCCTTTGCTCTGGGAACGGTTAGGCAGCGATGCTTATGGAACCGATACTTTGTTCT 2484 Query 2570 TTGCGTTCTATTATCAGCAGAACTCATACCAGCAATATCTAGCGGCAAAAGAGCTGAAGA 2629 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 2485 TTGCGTTCTACTATCAGCAGAACTCATACCAGCAATATCTTGCTGCAAAAGAGCTGAAGA 2544 Query 2630 AACAGTCATGGAGATACCACAGAAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2689 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2545 AACAGTCATGGAGATACCACAGGAAGTTCAACACTTGGTTTCAGAGACATAAAGAGCCAA 2604 Query 2690 AGATTGCAACCGATGAATATGAACAAGGAGCCTATGTTTACTTTGATTTCCAAACCCCCA 2749 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | Sbjct 2605 AGATTGCAACCGATGAATATGAACAAGGAGCCTACGTTTACTTCGATTTCCAAACCCCGA 2664 Query 2750 AAGACGAGAATCAAGAAGGAGGATGGTGTCAGAGGATCAAAAATGAGTTCACATTTGAAT 2809 |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 2665 AAGACGAGAATCAAGAAGGAGGATGGTGCCAAAGGATCAAAAACGAGTTCACATTTGAAT 2724 Query 2810 ACAGTTATCTAGAAGATGAACTCGTCGTATAGAATAGAGAGAGATATACATGTTTGTATA 2869 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2725 ACAGTTATCTTGAAGATGAACTCGTCGTATAGAATAGAGAGAGATG--CATGTTTGTATA 2782 Query 2870 TACTCTTGAGCAAGTGT-T-ATT-T--CCTGCGTCTATTTTGTACTCTTCTTTTCAATAA 2924 |||||| |||||||||| | ||| | |||||| |||||| ||||||||||||||||||| Sbjct 2783 TACTCTCGAGCAAGTGTGTTATTATTTCCTGCGACTATTT-GTACTCTTCTTTTCAATAA 2841 Query 2925 ACTAATTACTTTTAGTTTCAAACAA 2949 ||||||||||||||||||||| ||| Sbjct 2842 ACTAATTACTTTTAGTTTCAA-CAA 2865 Score = 429 bits (232), Expect = 7e-119 Identities = 282/304 (93%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 1 ATCCATAAAAGATCCAATCAAAATTCATTCATCCATCCATCATCGTTAGTTACATACA-C 59 ||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| | Sbjct 20 ATCCACAAAAGATCCAATCAAAATTCATTCA--C--CCATCATCGTTAGTTAC--ACATC 73 Query 60 ATCATCTCCTTCCTCTCGCTCCCTTCTGATAGCGAAACCCTAAAATACTATCAGCTGCTA 119 ||| ||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 74 ATCGTCTTCTTCCTCTCGCTCCC-TCTGATAGCGAAACCCTAAAATACTCTCAGCTGCTA 132 Query 120 CTTTCCGAAACCAAATTCCGACGAATTAA--CtttttttttgttttttGGATAAAATCAT 177 ||||||| |||||||| |||||||||||| |||||||||| || |||||||||||| Sbjct 133 CTTTCCGTAACCAAATCCCGACGAATTAACCCTTTTTTTTT-TTGGGGGGATAAAATCAT 191 Query 178 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CGGAGTCTCTTCTCTGGTTCGGCTGTGATGGGTGCGAGCCGGAAATTACAAGGCGAGATA 251 Query 238 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GATCGGGTGCTGAAGAAGGTTCAAGAAGGTGTTGATGTTTTCGACAGCATCTGGAACAAG 311 Query 298 ATGG 301 ||| Sbjct 312 -TGG 314 > AT5G28262.1 | Symbols: | other RNA | chr5:10238550-10239773 FORWARD LENGTH=1006 Length=1006 Score = 174 bits (94), Expect = 4e-42 Identities = 122/135 (90%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 391 GTATATGATACAGACAATGTTAAC-CAAAAGGAAAAGTTCGAGGCGGACTTGAAGAAGGA 449 |||||||||||||||||| ||||| ||||| ||| ||| |||||||||| ||||| || Sbjct 668 GTATATGATACAGACAATTTTAACAAAAAAGTAAACGTTTGAGGCGGACTCAAAGAAAGA 727 Query 450 AATCAAGAAGCTGCAGCGGTATAGAGA-C-CAGATCAAGACTTGGATTCAGTCCAGTGAG 507 |||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 728 AATCAAGAAGTTGCAGCGGTATAGAGACCTCAGATCAAGACATGGATTCAGTCCAGTGAG 787 Query 508 ATCAAAGATAAGAAA 522 ||||||||||||||| Sbjct 788 ATCAAAGATAAGAAA 802 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 147691480192 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5