BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488725 Length=1801 Score E Sequences producing significant alignments: (Bits) Value AT5G18460.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2785 0.0 > AT5G18460.1 | Symbols: | Protein of Unknown Function (DUF239) | chr5:6122867-6126721 FORWARD LENGTH=1847 Length=1847 Score = 2785 bits (1508), Expect = 0.0 Identities = 1739/1843 (94%), Gaps = 45/1843 (2%) Strand=Plus/Plus Query 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCGATTT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCCATTT 60 Query 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120 Query 121 CAAATATATAC--A-T-TT--A--TATAT-T-TT-GG---GC----TAGCTATAGTAATT 162 ||||||||||| | | || | ||||| | || || || |||||||||||||| Sbjct 121 CAAATATATACATACTCTTACATTTATATATCTTGGGCTAGCTAAGTAGCTATAGTAATT 180 Query 163 CTCTAATATCTCTTTCCATTTTCTTGAAATGGTCCTCCTCTCACCTTAACTTTAATAAGA 222 ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 181 TTCTAATATCTCTTTCCA-TTTCTTGAAATGGTCCTCCTCTCACCTTAACTTT-ATAAGA 238 Query 223 ATCTGACCTCCTCTCA-GTTTCCAATTTCTTCACTTTCTCGTTCTTTGGACACTGAATGT 281 |||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||| Sbjct 239 ATCTGACCACCTCTCAGGTTTCCAGTTTCTTCACTTTCTCGTTCTCTGGACACTGAATGT 298 Query 282 GATACATATATACAAGAAGAAAGCTTTAAAAGATCGATCGATGGAGGTTG-TTGTTCTTG 340 |||||||||||| |||||||||||| ||| |||| |||||||||||| || |||||||| Sbjct 299 GATACATATATAGAAGAAGAAAGCTATAAGAGATTGATCGATGGAGG-TGAATGTTCTTG 357 Query 341 CATCCAAGAGAAGTCTTCTTCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 400 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 358 CATCCAAGAGAAGTCTTCTCCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 417 Query 401 TCATACATATCTCTGCCTTTAACGACAGCAAACCATACAGACAAGTCAGTAGCTTGAGAC 460 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 418 TCAGACATATCTCTGCCTTTAACGACACCAAACCATACAGACAAGTCAGTAGCTTGAGAC 477 Query 461 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 537 Query 521 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 597 Query 581 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 657 Query 641 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 717 Query 701 TGAACGGCACGTGGTGTCCTAAGGGGACGGTTCCCATACGACGCAACACAATGAACGATG 760 ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 718 TGAACGGCACGAGGTGCCCTAAGGGGACCGTTCCCATACGACGCAACACAATGAACGATG 777 Query 761 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGAGACGGAGTATTGACCTTGATC 820 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 778 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGCGACGGAGTATTTACCTTGATC 837 Query 821 GACAGACAGAGAAGCCTGATGCACTTGGTACCAATGGACATGAGCATGCGATCGCGTATA 880 || |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 838 AACGGACAGAAAAGCCTGATGCCCTTGGTACCAATGGACATGAGCATGCGATCGCTTATA 897 Query 881 CGGAAACATCGTCGGAGATATATGGAGCAAAGGCGACGATAAACGTTTGGGATCCAAAGA 940 | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 898 CAGAATCATCGTCGGAGATATATGGAGCAAAGGCGACTATAAACGTTTGGGATCCAAAGA 957 Query 941 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTCG 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 958 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTAG 1017 Query 1001 GTCCTGATCTCAATAGTATAGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1060 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GTCCTGATCTCAATAGTATTGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1077 Query 1061 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1137 Query 1121 ATCTTCTATGTTCTGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATTT 1180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1138 ATCTTCTATGTTCGGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATAT 1197 Query 1181 CTCCTCTTTCTACTTTCAAAGGAAACCAATTTGATATCACAATACTCATTTGGAAGGATC 1240 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1198 CTCCTCTTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGGATC 1257 Query 1241 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGACAGTACACTAGTGGGGTATTGGCCAG 1300 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 1258 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCGGGTATTGGCCAG 1317 Query 1301 CCGAGCTATTCACACACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAGGTTG 1360 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1318 CCGAGCTATTCACGCACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAAGTCG 1377 Query 1361 TGAACACACGAGCTTCAGGCCGGCACACGACAACCCAAATGGGTTCTGGTCATTTTCCAG 1420 | |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct 1378 TCAACACACGTGCTTCAGGCAGGCACACGACGACCCAAATGGGCTCTGGTCATTTTCCAG 1437 Query 1421 ACGAAGGATTTGGAAAAGCAAGTTACTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1480 ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1438 ACGAAGGGTTTGGGAAAGCAAGTTATTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1497 Query 1481 GTCTCGTACCGGTGCGTGATGTCAAGATATTAGCCGAGAACACCGAATGTTACGACATTA 1540 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1498 GTCTCGTACCGGTGCATGATGTCAAGATACTAGCCGAGAACACCGAATGTTACGACATTA 1557 Query 1541 AGAGTTCGCATAATAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1600 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 AGAGTTCGTATAGTAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1617 Query 1601 CTAGGTGTAATTGAAATT---G-G------GTT-GG-----AGGAGTGGAGaaaaaaaaa 1644 |||||||||||||||||| | | ||| || |||||||||| |||||||| Sbjct 1618 CTAGGTGTAATTGAAATTAAAGTGTACATAGTTCGGGTTGGAGGAGTGGAGGAAAAAAAA 1677 Query 1645 aaGGGG-TCGAA-TATGTAATTTTTT-CAATTACGGGTAGTGAAA-ATTGAATATTGGCT 1700 ||||| ||||| ||||||||||||| ||| || ||||||||||| |||||||||||||| Sbjct 1678 GAGGGGGTCGAAATATGTAATTTTTTTCAAGTATGGGTAGTGAAAGATTGAATATTGGCT 1737 Query 1701 TATTGTTTTTGATTTGTCGT-T-GTTGGTTTAAATCTAGTAATTTATTGCACTCATAGAA 1758 |||||||||||||||||| | | ||||||| ||||||||||||||||||| ||||||| | Sbjct 1738 TATTGTTTTTGATTTGTCATATTGTTGGTTGAAATCTAGTAATTTATTGCCCTCATAGGA 1797 Query 1759 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGATAAATTTT 1801 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1798 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGACAAATTTT 1840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89105967375 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5