BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488753
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18660.1 | Symbols: PCB2 | NAD(P)-binding Rossmann-fold supe... 2218 0.0
> AT5G18660.1 | Symbols: PCB2 | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:6220781-6222228 REVERSE LENGTH=1448
Length=1448
Score = 2218 bits (1201), Expect = 0.0
Identities = 1348/1419 (95%), Gaps = 9/1419 (1%)
Strand=Plus/Plus
Query 1 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCGTCA-AAACAACATTGTACAGA 59
|||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||
Sbjct 34 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCAT-AGAAACAGCATTGTACAGA 92
Query 60 GATTTCAAAGCATGTCACTTTGTTCTTCGTTCAACGTTTTCGCTTCATACTCACCAAAAC 119
|||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 93 GATTTCAAAGAATGTCACTTTGCTCTTCCTTCAACGTATTCGCTTCCTACTCACCAAAAC 152
Query 120 CCAAAACCATCTTCAAAGATTCCAAATTCATTGCACAATTTCAGGTAAAGTCGTCTCCTT 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 153 CCAAAACCATCTTCAAAGATTCCAAATTCATTTCACAATTTCAGGTAAAGTCGTCTCCTT 212
Query 180 TAGCTTCAACATTCAAAACCCATGAATCCTCAGA-GACTCTTAAGTTTAAAAGAGCGAGA 238
|||||||||||||| | || ||||||||||| | || |||||||| ||| |||||||||
Sbjct 213 TAGCTTCAACATTCCACACAAATGAATCCTCA-ACGAGTCTTAAGTATAAGAGAGCGAGA 271
Query 239 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCGTCTTCCTTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 272 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCACCTTCATTC 331
Query 299 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGATACATAGGT 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 332 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGGTACATAGGT 391
Query 359 AGATTCGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGACTGCTGTTGCGAGAGAG 418
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 392 AGATTTGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGATTGCTGTTGCGAGAGAG 451
Query 419 AAGAGTGGGATTAGAGG-AAAGAACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 477
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 452 AAGAGTGGGATTAGAGGCAAA-AACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 510
Query 478 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 570
Query 538 AGGGTTTGGTATTGATGTTGTTGTGTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 597
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 AGGATTTGGTGTTGATGTTGTTGTTTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 630
Query 598 TTCTTGGAAGATTGATTATGAAGCTACCAAGAATAGTCTTGTAGCTGGGAAGAAGTTTGG 657
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 631 TTCGTGGAAGATTGATTATGAAGCTACCAAAAACAGTCTTGTAGCTGGGAAGAAGTTTGG 690
Query 658 TGCTAAGCATTTCGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTGTTGGAGTTTCA 717
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 691 TGCTAAGCATTTTGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTACTGGAGTTTCA 750
Query 718 GAGAGCGAAACTGAAGTTCGAAGCCGAGTTGATGGATTTGGCGGAGAAACAAGACTCGAG 777
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||
Sbjct 751 GAGAGCGAAACTGAAGTTCGAAGCAGAGTTGATGGATTTGGCTGAGCAACAAGACTCTAG 810
Query 778 CTTTACTTACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CTTTACATACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 870
Query 838 GATTGTGAAAGATGGGAAACCTTATGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 897
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 871 GATTGTGAAAGATGGGAAACCTTACGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 930
Query 898 ACCGATCAGCGAACAGGATTTAGCAGCGTTTATAGCGGATTGTGTGTTGGAAGAGAATAA 957
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 931 ACCGATCAGCGAACAAGATTTAGCAGCGTTTATAGCGGATTGCGTGTTGGAAGAGAACAA 990
Query 958 GATCAATCAAGTTTTACCAATTGGTGGACCAGGGAAGGCGTTAACGCCATTGGAGCAAGG 1017
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 991 GATCAATCAAGTTTTGCCAATTGGTGGACCAGGCAAGGCATTAACGCCATTAGAGCAAGG 1050
Query 1018 AGAGATTTTGTTTAGGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1077
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 AGAGATTCTGTTTAAGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1110
Query 1078 TATGGATTTTGTGATTGGGGTTCTTGATTCTATTGCAAAGATTTTTCCTTCGGTTGGAGA 1137
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1111 TATGGATTTTGTGATTGGTGTTCTCGATTCTATTGCAAAGATCTTTCCTTCGGTTGGAGA 1170
Query 1138 GGCTGCTGAGTTTGGGAAGATCGGGAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1197
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1171 GGCTGCCGAATTTGGGAAGATTGGAAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1230
Query 1198 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTATGGGAAAGACACGCTTGA 1257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1231 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTACGGGAAAGACACGCTTGA 1290
Query 1258 GGATTTCTTTGCGAAAGTGATCAGAGAAGGAATGGCAGGTCAAGAACTCGGTGAACAGTT 1317
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1291 GGATTTCTTTGCGAAAGTGATCAGAGAAGGCATGGCGGGTCAAGAACTCGGTGAACAGTT 1350
Query 1318 CTTCTAGTGTGAAAT-TTTTA-TGCAAAATGAGTTTGGCTGTGTAGTTTGTAACTGATGT 1375
|||||||| |||| | |||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 1351 CTTCTAGTATGAATTGTTTTTGTGCGAAATGAGTTTG-CTGTGTAGTTTGTAACTGATGA 1409
Query 1376 GATTATAAATATAAAATCTGTGAATTTGAGAGATTTGTT 1414
|||||||||||||||| |||||||||||||||||| |||
Sbjct 1410 GATTATAAATATAAAACCTGTGAATTTGAGAGATTCGTT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5