BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488765
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18780.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1980 0.0
> AT5G18780.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:6264284-6266097 FORWARD LENGTH=1652
Length=1652
Score = 1980 bits (1072), Expect = 0.0
Identities = 1241/1324 (94%), Gaps = 6/1324 (0%)
Strand=Plus/Plus
Query 9 AGGACGAGTT-GGTACAAGTGGGGAAGACAGGTTAAGCATATTACCTGAACCATTGTTAT 67
|||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 332 AGGACGAGTTAGG-GGAAGTGGGGAAGACAGGATAAGCATATTACCTGAACCATTGCTAT 390
Query 68 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCGGTTAGGACAAGTGTTTTGTCCTCTA 127
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 391 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCTGTTAGGACAAGTGTTCTGTCTTCTA 450
Query 128 GATGGAGAGATCTCTGGCTTTGGGTTCCTATATTAGACTTGGACAAATCCGACTTCTCAG 187
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 451 GATGGAGAGATCTCTGGCTATGGGTTCCTAGATTAGACTTGGACAAATCCGACTTCTCTG 510
Query 188 ATGACATTCCCTCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 247
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATGACAATCCATCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 570
Query 248 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACACTTCTACACTCGAGGCCT 307
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 571 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACATTTCTACACTCGACGCCT 630
Query 308 GTCTGATGGGACTTGTTAAGTGTAGGATTCAGCATTTTGAAATCGAGAATTATTTTGGCT 367
|||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 631 GTCTGATGAGACTTGATAAGTGTAAGATTCAGCATTTTGAAATCGAGAATTGTTTTGGCT 690
Query 368 TTTGTATCCTCATGATGCCTTTGATCCTTTCAATGTGTCACACATTGGTAACCTTGAAAC 427
||||||||||| ||||||||||||| || ||||||||||||| ||||||| ||||||||
Sbjct 691 TTTGTATCCTCCTGATGCCTTTGATAATTCCAATGTGTCACACTTTGGTAAGCTTGAAAC 750
Query 428 TCAGTTTCGTAATTCTGAGTAAATTCGAGTCTCTTTCCTTACCCTGTCTCGAGATAATGC 487
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 751 TCAGTTTCGTAATTCTGAGTAAATTCGGGTCTCTTTCTTTACCCTGTCTCGAGATAATGC 810
Query 488 ACTTCGAAAAGGTTATATTTCCGGGTGACAAGGCTGCAGAGGCACTAATCT-CATGCTCT 546
|||| ||||||||||||||||| |||||||| ||||||||| ||||| | ||||||||
Sbjct 811 ACTTTGAAAAGGTTATATTTCCCAGTGACAAGTCTGCAGAGGTGCTAAT-TGCATGCTCT 869
Query 547 CCGGTTCTTAGAGATTTGAAAATAAGCCAGAGTAGAGATGATGCTGTAGAAGTTTTACGC 606
||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 870 CCGGTTCTTAGAGATTTGAGAATAAGCCAGAGTGGAGATGATGCTGTTGAAGTTTTACGC 929
Query 607 GTCTGCTCTGCCTCACTAAAGAGCTTCACTTTGAAACTAACTGATCGTGATTATGTT-GA 665
||||||||||||||||| |||||||||||| |||||| || |||| |||||||||| ||
Sbjct 930 GTCTGCTCTGCCTCACTGAAGAGCTTCACTCTGAAACGGACGGATCATGATTATGTTGGA 989
Query 666 CAATGGTGGATTTACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 725
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 -AATGGTGAATATACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 1048
Query 726 TTACCAATGCAAAGGCTTCAAGATAGTCAGTATGAGTGAAGATGTCAAGGTTGATGTTGA 785
||| |||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 1049 TTATCAATGCCAAGGCTTCAAGATAGTCAGTATGAGTGAATATGTCAGGGTTCATGTTGA 1108
Query 786 TGTCGTATTTGAAGTGATAGGTGGTACGGTATTGTCCAAAAGAAATATCATTTGTGATTT 845
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1109 TGTCGTATTTGAAGTGATAGGTGGTACTGTATTGTCGAAAAGAAATATCATTTGTGATTT 1168
Query 846 TCTATCCTGTGTTTCAAATGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 905
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TCTATCCTGTGTCTCAAACGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 1228
Query 906 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTCTGCGTTC 965
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1229 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTTTGCGTGC 1288
Query 966 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCAAA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1289 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCGAA 1348
Query 1026 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTAACAGAAGGGACAAGTGG 1085
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1349 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTGACGGAGGGGACAAGTGG 1408
Query 1086 ACTTTTGACTGCCCCGCCTCGTTGTTTGATTTCATCCCTTGAATCTGTCGATATCGAAAG 1145
||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1409 ACTTTTGACTGTGCTGCCTCGTTGTTTGATATCATCCCTTGCATCTGTCGATATCGAAAG 1468
Query 1146 CCCGATAACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTTTTGGAGAACTCGAC 1205
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1469 CCCAATCACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTGTTGGAGAACTCGAC 1528
Query 1206 AACACTCAAGAAGCTTGTTCTTCGTTTGAATCAGTCTTGTCGAGATAAACACGAGCCGGG 1265
||| || |||||||||||||| |||||||||||||||||| |||||||| | ||||| ||
Sbjct 1529 AACTCTGAAGAAGCTTGTTCTACGTTTGAATCAGTCTTGTAGAGATAAATATGAGCCAGG 1588
Query 1266 TCTCTTGAAACAACTCTTAGAATCTCCAAGGTGCTCTAGTTTGTGTCAACTAGTCATTAT 1325
||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1589 TCTCTTGAAACAAGTCTTACAATCTCCAAGGTGCTCTAGTTTGTGTCAATTAGTCATTCT 1648
Query 1326 CTGA 1329
||||
Sbjct 1649 CTGA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5