BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488785
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19010.1 | Symbols: MPK16 | mitogen-activated protein kinase... 3199 0.0
AT1G53510.1 | Symbols: ATMPK18, MPK18 | mitogen-activated prote... 459 7e-128
> AT5G19010.1 | Symbols: MPK16 | mitogen-activated protein kinase
16 | chr5:6344789-6348212 REVERSE LENGTH=2547
Length=2547
Score = 3199 bits (1732), Expect = 0.0
Identities = 1978/2094 (94%), Gaps = 27/2094 (1%)
Strand=Plus/Plus
Query 227 AACTACCCTGATTTGTTTCATTCGATTCTGGATTTAGGGATTTGGATATTGAGCTCT-GG 285
|||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
Sbjct 344 AACTACTCTGATTTGTTTCAATCGATTCTGGATTTCGGGATTTGGATATAGAGCTCTCTG 403
Query 286 GTTTTGACATTGCCATTGGAACTAAAATTCTCAGTCTTTGCATTTCTTTGATTC-AAAGC 344
||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 404 TTTTTGACATTGCCTTTGGAACTAAAATTCTCAGTCTTTGCATTTTTTTGATTCAAAAGC 463
Query 345 TTACTAAGTTCGGTTTTTGGAAGAGATTCCATTTGGTCTTCGTAAGCGTGTTTTGGATGC 404
| |||||||| || ||| |||| ||| |||||||||||||||||||| |||| ||||
Sbjct 464 TCACTAAGTTTGGGTTTCAGAAGCTATTACATTTGGTCTTCGTAAGCGTCCTTTGAATGC 523
Query 405 TCTGTAGCCGAAGATGCAACCTGATCAGCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 464
||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 524 CCTGTAGCTGAAGATGCAGCCTGATCACCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 583
Query 465 CACGGAATACGGTGAAGGAAGCAGATACAGAATAGAGGAAGTTATTGGTAAAGGAAGCTA 524
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 584 CACGGAATATGGTGAAGGAAGCAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGTTA 643
Query 525 TGGAGTTGTTTGCTCGGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAGAT 584
||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 644 TGGAGTTGTCTGTTCTGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAAAT 703
Query 585 CAATGATAT-TTTCGAGCATGTTTCGGATGCAACTCGCATTCTCCGTGAGATCAAACTTC 643
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 704 CAATGATATCTTT-GAGCATGTTTCGGATGCAACTCGCATTCTTCGTGAGATCAAACTTC 762
Query 644 TCAGACTCTTACGCCATCCAGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 703
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTAGACTCTTACGCCATCCTGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 822
Query 704 GAAGAGAGTTTAAAGACATTTATGTGGTTTTCGAGCTCATGGAATCTGATTTGCATCAGG 763
||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 823 GAAGAGAGTTTCGAGACATTTACGTGGTTTTCGAGCTTATGGAATCTGATTTGCATCAGG 882
Query 764 TTATTAAGGCAAATGATGATTTGACTCGTGAGCATTACCAGTTTTTTCTCTATCAGCTTC 823
||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 883 TTATTAAGGCAAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCCTCTATCAGCTTC 942
Query 824 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTAAAACCAAAAA 883
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 943 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTTAAACCCAAAA 1002
Query 884 ACATACTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 943
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ACATATTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 1062
Query 944 CATTCAATGATACACCAACCGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1003
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CATTCAATGATACACCGACTGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1122
Query 1004 GGGCTCCAGAACTGTGTGGATCATTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1063
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1123 GGGCTCCAGAACTATGTGGATCTTTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1182
Query 1064 GCATCGGGTGCATTTTCGCAGAGCTCTTAACAGGGAAACCTCTTTTCCCGGGGAAAAATG 1123
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1183 GCATCGGGTGCATTTTTGCAGAACTCTTAACAGGGAAACCTCTTTTCCCCGGGAAAAATG 1242
Query 1124 TGGTCCATCAATTGGATCTGATGACGGATATGTTGGGAACTCCATCTGCTGAAGCCATTG 1183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1243 TGGTCCATCAATTGGATCTGATGACGGATATGCTGGGAACTCCATCTGCTGAAGCCATTG 1302
Query 1184 GAAGGGTGAGGAACGAGAAAGCTCGAAGATACTTAAGCAGCATGAGGAAGAAGAAGCCTA 1243
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1303 GAAGGGTTAGGAACGAGAAAGCTCGAAGATACTTGAGCAGCATGAGGAAGAAGAAGCCTA 1362
Query 1244 TTCCTTTTTCACATAAGTTCCCACATGCTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1363 TTCCTTTTTCACATAAGTTCCCACATACTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1422
Query 1304 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTATACT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTGTACT 1482
Query 1364 TCATGGGTTTAGCTAAGGTTGAAAGAGAGCCCTCTGCTCAACCTGTCACCAAGTTAGAAT 1423
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1483 TCAAGGGTTTAGCTAAGGTTGAAAGAGAGCCTTCTGCTCAACCTGTCACAAAGTTGGAAT 1542
Query 1424 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTGCGAGAGCTCATATACAGAGAGT 1483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1543 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTCCGAGAGCTCATATACAGAGAGT 1602
Query 1484 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1662
Query 1544 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAGTTTGCTTACCTCGAGGAACACT 1603
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1663 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAATTTGCTTACCTCGAGGAACACT 1722
Query 1604 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCACGCATCATTACCAAGGG 1663
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1723 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCATGCATCATTACCAAGGG 1782
Query 1664 CTTGTGTATTGTACTCTGATAACAATCATCCAGTGGCACAACAGAGTTCAGCTGAAATTA 1723
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1783 CTTGCGTATTGTACTCTGATAACAATCATCCGGTGGCACAACAGAGTTCAGCTGAAGTCA 1842
Query 1724 CTGATGGACTCTCTAAGTGTAGCATCAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1783
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1843 CTGATGGACTCTCCAAGTGTAGCATTAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1902
Query 1784 CCCAGATGCCAATGTCGAGAATTCCTATTAACGTCCCTCAAACGATCCAAGGTGCTGCAG 1843
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1903 CCCAGATGCCAATGTCGAGAATTCCTATCAACGTCCCTCAAACAATCCAAGGTGCTGCAG 1962
Query 1844 TAGCTAGGCCTGGAAAAGTAGTTGGATCAGTGTTACGCTATAAC---TGCGGCGCAGCCA 1900
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1963 TAGCTAGGCCTGGTAAAGTAGTTGGATCAGTGTTACGCTATAACAACTGCGGCGCAGCCA 2022
Query 1901 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 2082
Query 1961 CTCAATACCCAAAGAGGACTCATCCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2083 CTCAATACCCAAAGAGGACTCAACCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2142
Query 2021 CCGCCGCCGAAGGTCCAAGCAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGG 2080
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2143 CCGCTGCTGAAGGTCCAAGTAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGT 2202
Query 2081 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTTTGGTTCTAGTT 2140
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2203 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTATGGTTCTAGTT 2262
Query 2141 TTAGCTTAACCACTTCACGTCTCAGGGAGAGCTAAA--GAGTAGCCCTTTGAATCATCCA 2198
||||||| ||||| |||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 2263 TTAGCTTTACCACCTCACGTCTCAGGGAGAGCTAAAAAGAGTATCCCTTTGAGTCATCCA 2322
Query 2199 TCGTGTTATCAAGAGCCGAAACATGAAGAGA-G-T-AAGA-C-A--TG-GCTGAAG-A-G 2248
| |||||||||||||||||||| |||||| | | | |||| | | || | |||| | |
Sbjct 2323 TTGTGTTATCAAGAGCCGAAACGTGAAGACATGCTTAAGAGCGAAATGAGA-GAAGGAAG 2381
Query 2249 CG--A-AA--TGAGAGA--TTCTTACTGATCATGTCATGTAATTTGTCTTCATA 2295
|| | || | | ||| ||||||| |||| ||||||||||||||||||||||
Sbjct 2382 CGTGAGAAGATAAAAGAAGTTCTTACAGATCCTGTCATGTAATTTGTCTTCATA 2435
> AT1G53510.1 | Symbols: ATMPK18, MPK18 | mitogen-activated protein
kinase 18 | chr1:19970664-19974393 REVERSE LENGTH=2380
Length=2380
Score = 459 bits (248), Expect = 7e-128
Identities = 813/1076 (76%), Gaps = 77/1076 (7%)
Strand=Plus/Plus
Query 459 TTTCTTCACGGAATACGGTGAAGGAAGCAGATACAGAATAGAGGAAGTTATTGGTAAAGG 518
||| ||||| || || ||||| | || |||||| || || ||||||||||||||||||
Sbjct 278 TTT-TTCACAGAGTATGGTGATGCAAACAGATATAGGATTCTGGAAGTTATTGGTAAAGG 336
Query 519 AAGCTATGGAGTTGTTTGCT-CGGCT-TACGATACACATACCGGAGAGAAAGTTGCGATT 576
||||||||||||||| || | | ||| | ||||||||||| |||||||||||||| |||
Sbjct 337 AAGCTATGGAGTTGTGTG-TGCAGCTATT-GATACACATACTGGAGAGAAAGTTGCTATT 394
Query 577 AAGAAGATCAATGATAT-TTTCGAGCATGTTTCGGATGCAACT-CGCATTCTCCGTGA-G 633
|||||||| |||||| | ||| || ||| |||| ||||| || || ||||||||||| |
Sbjct 395 AAGAAGATTAATGATGTCTTT-GAACATATTTCTGATGCG-CTTCGTATTCTCCGTGAAG 452
Query 634 ATCAAACTTCT-CAGACTCTTACGCCATCCAGACATTGTTGAGATCAAACA-CATCT-TG 690
| || ||||| | | || ||||| ||||| || ||||| ||||||||| | ||| | ||
Sbjct 453 -TGAAGCTTCTTCGG-CTTTTACGGCATCCTGATATTGTGGAGATCAAA-AGCAT-TATG 508
Query 691 TTGCCGCCTTC-AAGAAGAGAGTTTAAAGACATTTATGTGGT-TTTCGAGCTCATGGAAT 748
|||| ||||| |||| ||||||||||||| || ||||| || ||| |||||||||||||
Sbjct 509 CTGCCTCCTTCTAAGA-GAGAGTTTAAAGATATCTATGTTGTGTTT-GAGCTCATGGAAT 566
Query 749 CTGAT-TTGCATCAGGTTATTAAGGCAAATGATGATTTGACTCGTGAGCATTACCAGTTT 807
| ||| || ||||| |||||||| || |||||||||||||||||||| || ||||||||
Sbjct 567 CAGATCTT-CATCAAGTTATTAAAGCTAATGATGATTTGACTCGTGAACACCACCAGTTT 625
Query 808 TTTCTCTATCAGCTTCTTCGTGGCCTCAA-GTAT-ATACACACAGCTAATGTCTT-TCAT 864
|| || |||||| | ||||||| | | || || | || || ||||||||||| || |||
Sbjct 626 TTCCTTTATCAGATGCTTCGTG-CTTTAAAGT-TCATGCATACAGCTAATGT-TTATCAC 682
Query 865 CGGGATCTAAAACCAAAAAACATACTGGCAAATGCTGATTGCAAACTCAA-GATCTGTGA 923
|| ||||| || ||||| || ||||| ||||| || ||||||| | || | | |||||
Sbjct 683 CGTGATCTTAAGCCAAAGAATATACTTGCAAACGCAAATTGCAAGTTGAAAGTT-TGTGA 741
Query 924 TTTTGGACTTG-CAAGAGTCGCATTCAATGATACACCAACCG-C-GATATTCTGGACTGA 980
|||||| ||| | ||||| || || |||||||| || || | | | | || ||||| ||
Sbjct 742 CTTTGGA-TTGGCTAGAGTAGCGTTTAATGATACTCCTAC-GACAG-TCTTTTGGACGGA 798
Query 981 TTATGTAGCTACTCGATGGTACAGGGCTCCAGAACTGTGTGGATCATT-TTTCTCAAAGT 1039
||||| || || ||||||| || || || || || ||||||||||| ||| || ||||
Sbjct 799 CTATGTTGCCACAAGATGGTATAGAGCACCTGAGCTCTGTGGATCATTCTTT-TCGAAGT 857
Query 1040 ATACACCGGCAATAGATATATGGAGCATCGGGTGCAT-TTTCGCAGAGCT-CTTAACAGG 1097
| || || || || || | |||||||| || ||||| ||| |||||| | || ||||||
Sbjct 858 ACACTCCAGCTATCGACGTTTGGAGCATTGGCTGCATCTTT-GCAGAGGTACT-AACAGG 915
Query 1098 GAAACC-TCT-TTTCCCGGGGAAAAA-TGTGGTCCATCAATTGGA-TCTGATGACGGATA 1153
||| || | | ||||| ||| ||||| ||| |||||||| ||||| | |||| || |||
Sbjct 916 GAAGCCAT-TGTTTCC-GGG-AAAAAGTGTTGTCCATCAGTTGGAGT-TGATTACTGATC 971
Query 1154 TG-TTGGGAACTCCATC-TGCTGAAGCCATTGGAAGG-GTGAGGAACGAGAAAGCTCGAA 1210
| |||| | | ||| | | ||| | ||| || || | || || |||||| |||
Sbjct 972 TTCTTGGCA-CACCAAAAT-CAGAAACAATTTCT-GGAGTTCGTAATGATAAAGCTAGAA 1028
Query 1211 GATACTTAAGCAGCA-TGAGGAAGAAGAAGCCTATT-CCTTTTTCACATAAGTTC-CCAC 1267
|||||| | | | | |||||||||| || ||| | |||| | | || || || |||
Sbjct 1029 AATACTTGA-CTGAAATGAGGAAGAAAAATCCTGTCACCTTCT-CGCAAAAATTTTCCAA 1086
Query 1268 ATGCTGATCCTCTT-GCTCTTCGTCTTCTAGAAAAGA-TGTTGTCTTTTGAACCCAAGGA 1325
| || ||||| || || || |||||| | | | || ||||| |||| || || |||||
Sbjct 1087 A-GCAGATCCA-TTAGCACTCCGTCTTTT-GCAGAGGCTGTTGGCTTTCGATCCAAAGGA 1143
Query 1326 CCGGCCTACAGCTGAAGAGGCGCTT-GCAGATG-TATACTTCATGGGT-TTAGCTAAGGT 1382
|| || || ||| |||||| || || ||| | ||||||| |||| || ||||| |
Sbjct 1144 TCGACCGACTCCTGCAGAGGCA-TTAGCTGATCCT-TACTTCAAGGGTCTTT-CTAAGAT 1200
Query 1383 TGAAAGAGAGCCCTCT-GCTCAACCTGTCACCAAGTTAGAATTTGAGTTTGAAAGGCGGA 1441
||||||||| || || | ||| | || | || | || ||||| ||||| ||||| |
Sbjct 1201 TGAAAGAGAACCTTCAAG-TCAGCAAATCTCGAAAATGGAGTTTGAATTTGAGAGGCGAA 1259
Query 1442 GGATCACAAAAGAAGACGTGCGAGAGCTCATATACAGAGAG-TCTCTGGAGTACCA 1496
|| | ||||| || ||| | |||| || ||||||||||| | |||||||||||
Sbjct 1260 GGTTGACAAAGGACGACATTAGAGAACTAATATACAGAGAAATA-CTGGAGTACCA 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113905036605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5