BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488799
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19140.1 | Symbols: ATAILP1, AILP1 | Aluminium induced prote... 1483 0.0
> AT5G19140.1 | Symbols: ATAILP1, AILP1 | Aluminium induced protein
with YGL and LRDR motifs | chr5:6423269-6426166 FORWARD
LENGTH=1215
Length=1215
Score = 1483 bits (803), Expect = 0.0
Identities = 925/983 (94%), Gaps = 12/983 (1%)
Strand=Plus/Plus
Query 1 GAAATTGAGGAAGTGATCGTAATCGCCGGAGGAGAGAGAGAAAATGTTGGGAATTTTCAG 60
|||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 87 GAAATTAAGGAAGTGATTGTTATCACCGGAGGAGAGAGAGAAAATGTTGGGAATTTTCAG 146
Query 61 TGGAGCTATAGTATCGCCGCCGGAAGAGCTGGTGGCTGCCGGAAGCCGAACTCCGTCGCC 120
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 147 TGGAGCTATAGTATCGCCGCCGGAAGAGTTAGTGGCTGCCGGAAGCAGAACTCCGTCGCC 206
Query 121 GAAAACAACCGGAGCAACTCTAGTGAACCGTTTCGTCGAGAAAAATCCATCCGCTGTTTC 180
||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 207 GAAAACAACCGGATCAACTTTAGTAAACCGGTTCGTCGAGAAAAATCCATCCGCTGTTTC 266
Query 181 TGTTCAAGTCGGCGACTATGTTCAGCTTGCTTTCAGCCATCACAACGAGAATCCTCTCCG 240
||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 267 TGTACAAGTCGGCGACTATGTTCAGCTTGCTTACAGCCATCACAACGAGAGTCCTCTCCG 326
Query 241 GCCGAGATCATTTGGGGCTAAGGATGAGATATTCTGCTTGTTCCAAGGTTCACTTGACAA 300
||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 327 GCCTAGATCATTTGGAGCTAAGGATGAAATATTCTGCTTGTTCCAAGGCTCACTTGACAA 386
Query 301 CCTAGGAAGCTTGAAACAGCAATACGGGCTTGCAAAGAACGCAAACGAGGTTCTTTTGGT 360
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 387 CCTAGGAAGCTTGAAACAGCAGTACGGGCTTGCAAAAAACGCAAACGAGGTTCTCTTGGT 446
Query 361 CATCGAGGCTTATAAGACTCTCCGTGACAGAGCTCCTTACCCGGCCAACCACGTTGTGGC 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 447 CATCGAGGCTTATAAGACTCTCCGTGACAGAGCTCCTTACCCGGCTAACCACGTTGTTGC 506
Query 421 TCACCTAAGCGGTGATTTCGCCTTTGTGGTCTTCGATAAATCAACCTCCACTCTGTTTGT 480
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 507 TCACCTAAGTGGCGATTTCGCCTTTGTGGTCTTTGATAAATCAACCTCCACTCTGTTTGT 566
Query 481 AGCCTCTGACCAAGTTGGCAAGGTTCCACTGTATTGGGGAATAACAGCTGATGGATATGT 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 567 AGCCTCTGACCAAGTTGGCAAGGTTCCATTGTATTGGGGAATAACAGCTGATGGCTATGT 626
Query 541 GGCATTTGCTGATGATGTTGAGTTGCTAAAAGGTGCTTGTGGCAAGTCTCTTGCGTCTTT 600
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 627 GGCATTTGCTGATGATGTTGACTTACTAAAAGGTGCTTGTGGCAAGTCTCTTGCGTCTTT 686
Query 601 CCCTCAAGGCTGTTATTACTCAACGGCGTTAGGTGGGCTTAGGAGCTTCGAGAACCCTAA 660
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 687 CCCTCAAGGCTGTTATTACTCGACGGCATTAGGTGGGCTTAGGAGCTTCGAGAACCCTAA 746
Query 661 GAACAAGATCACTGCAGTTCCTGCTAATGAGGAAGAAATTTGGGGAGCCACCTTCAAGGT 720
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 747 GAACAAGATCACTGCAGTTCCTGCTAATGAGGGAGAAATTTGGGGAGCTACCTTCAAGGT 806
Query 721 GGAAGGAGCAACAGTTCTTGCAGATTGAGGATTAAAGAGAACaaaaaaaGAAGAAGATCC 780
|||||||||||||||||||||||||||| || |||||||| | | ||| | |||| | |
Sbjct 807 GGAAGGAGCAACAGTTCTTGCAGATTGAAAATGAAAGAGAA-ACACAAA-A-GAAGTTTC 863
Query 781 ATGTCTCTTAAA--TCTCGAACTGTAACAGCa-aaa-aaataaaaaatgatgtaggaaaa 836
|||||||||||| |||||||||||||||||| ||| ||| ||||||| |||||||||||
Sbjct 864 ATGTCTCTTAAAGCTCTCGAACTGTAACAGCACAAACAAA-AAAAAAT-ATGTAGGAAAA 921
Query 837 acaaaaaGCTGTTCTATGAGTTCTTGAAGCTACCAATGGTTGGTGAT---GTGTGTAGTG 893
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct 922 ACAAAAAGCTGTTCTATGAGTACTTGAAGCTATCAATGGTTGGTGATAATGTGTGTAGTG 981
Query 894 TTGTATCTCTCTTATGTTTTATGCTTCTTTGTACAGCCCGTGTCTGTCTTCTGGTGTTAT 953
||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 982 TTGTATCTCTCTTATGTCTTATGCTTCTTTGTACAGCACGTGTGTGTCTTCTGGTGTTAT 1041
Query 954 TAGTGTCTTCTTCCTAATAAGTT 976
|||||||||||||||||||||||
Sbjct 1042 TAGTGTCTTCTTCCTAATAAGTT 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5