BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488803 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT5G19190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1057 0.0 > AT5G19190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6457260-6458031 FORWARD LENGTH=667 Length=667 Score = 1057 bits (572), Expect = 0.0 Identities = 631/657 (96%), Gaps = 14/657 (2%) Strand=Plus/Plus Query 1 CCACTTGAAGCAAACCCAATAA-AAAACACACACACAAGACTTGTCTTACAAAACAACCA 59 ||||||||||||||||||| || |||| |||||||||||||||| |||||||||||| || Sbjct 1 CCACTTGAAGCAAACCCAA-AAGAAAA-ACACACACAAGACTTGGCTTACAAAACAAACA 58 Query 60 AGTC-TCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 AGTCTTCAAGAAACTTGGAAAGCTAAGAGCTATGGCTATGGAGTTAGAGCTTGATGATGA 118 Query 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TGTCTTCTTTGCAGACATAAGCAAACAGATCTCTCTTCTCATCATGGATGAAGATGAACA 178 Query 179 CTTAAACCCTGTTTCTCTGTCTTCCTCCTCATCCTCTCTCTCATTCCAGGGTTTGTTCAG 238 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 179 CTTAAACCCTGTTTCTCTCTCTTCCTCCTCCTCCTCTCTCTCATTCCAGGGTTTGTTCAG 238 Query 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AGGAGGTTACCAAACGGCTCCATATATGTATCAACAAGAACAGAGCAAAGGGACTGGTGT 298 Query 299 GTTCATCCCTAAATCTTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GTTCATCCCTAAATCGTCTCAGCCTAGAAGAAGACCTCATCATCATCAGAAGCAAGGTAG 358 Query 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GTATAGTTCCTTCAACGCCAAGCAACAACACTCTCTTCATCAAAACAGACAAGAGTATCA 418 Query 419 TCAGCAGAGCCATGAGAACTCAAGAAGTACTGTCACCACTCACAACAA---CAACAACAA 475 || | | | |||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 419 GCAA-A-ATC-ATGAGAACTCAAGAAGTACTCTCACCACTCACAACAATAACAACAACAA 475 Query 476 GAGCAACATGAACA-C--TAATGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 532 |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct 476 GAGCAACATGAACAGCACTAGTGTTCATGCTTCTATCCCAAGAAGAAGCTACAGAGATGC 535 Query 533 ATCATCTATCTACACCTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 592 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ATCATCTATCTACACTTGATTAATTTTAACAAATATTCTTCTGTGTGATCAATTCATATA 595 Query 593 ATTTTAAATTAGATGCATAAGATTGATTTGTTTGTAAATTCAGCGAACAATAAAAGG 649 |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 596 ATTT-AAATTAGATGCATAAGATTTATTTGTTTGTAAATTCAGCGAACAATAAAAGG 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5