BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488807 Length=1712 Score E Sequences producing significant alignments: (Bits) Value AT5G19220.1 | Symbols: ADG2, APL1 | ADP glucose pyrophosphoryla... 2785 0.0 AT5G19221.1 | Symbols: | other RNA | chr5:6464234-6466349 FORW... 198 1e-49 > AT5G19220.1 | Symbols: ADG2, APL1 | ADP glucose pyrophosphorylase large subunit 1 | chr5:6463824-6466831 REVERSE LENGTH=1732 Length=1732 Score = 2785 bits (1508), Expect = 0.0 Identities = 1652/1721 (96%), Gaps = 12/1721 (1%) Strand=Plus/Plus Query 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTTTTATCTTCCCCTCTCTTCAAACCCTTCAAGAGACAATCTTTCCTGCGAAAATGG 60 Query 61 TGGTCTCTGCTGACTGCAGAATCTCCTTCTCTGCCCCGAGCTGCATACGTAGTAGCTCCA 120 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 61 TGGTCTCTGCTGACTGCAGAATCTCCCTCTCTGCCCCTAGCTGCATACGTAGTAGCTCCA 120 Query 121 CGGGCTTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGGGATTGACTAGGCACATTAAGCTTGGCAGCTTCTGCAATGGTGAGCTCATGGGGAAGA 180 Query 181 AGCTCAACTTGGCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCCCTCAGA 240 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 AGCTCAACTTGTCTCAGCTTCCAAACATTCGTCTTCGATCTTCTACTAACTTCTCTCAGA 240 Query 241 AGAAAATCTCAATGTCTCTAAATAGTGTAGCTGGAGAGAGTAAGGTACAAGAACTTGAGA 300 ||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 AGAGAATTTTAATGTCTCTAAATAGTGTAGCTGGGGAGAGTAAGGTACAAGAACTTGAGA 300 Query 301 CTGAGAAAAGGGATTCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGAGAAAAGGGATCCAAGGACAGTTGCTTCCATTATTCTTGGAGGTGGAGCAGGAACTC 360 Query 361 GTCTCTTTCCTCTCACGAAACGCCGCGCCAAGCCTGCTGTTCCTATCGGGGGAGCCTATA 420 | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 GACTCTTTCCTCTCACAAAACGCCGCGCCAAGCCTGCCGTTCCTATCGGGGGAGCCTATA 420 Query 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTTGATAGATGTACCAATGAGCAATTGTATTAACAGCGGAATCAACAAAGTCTACATAC 480 Query 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCGTACAACTCCAATG 540 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 481 TCACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCTTACAACTCCAATG 540 Query 541 GAGTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GACTTGGCTTTGGAGATGGCTATGTTGAGGTTCTTGCGGCCACTCAAACGCCAGGAGAAT 600 Query 601 CTGGTAACAGGTGGTTCCAAGGTACAGCAGATGCAGTTCGGCAATTCCATTGGCTTTTCG 660 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 CTGGTAAAAGGTGGTTCCAAGGTACAGCAGATGCGGTTCGGCAATTCCATTGGCTTTTCG 660 Query 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACA 720 Query 721 GGATGGATTATATGGATTTTGTACAGGATCATCGGCAGAGTGGCGCAGATATAAGCATTT 780 |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 721 GGATGGATTACATGGATTTTATACAGGATCATCGGCAGAGTGGCGCGGATATAAGCATTT 780 Query 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CCTGCATACCAATAGATGACAGACGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACA 840 Query 841 AAGGAAGAGTTATCTCTTTCAGTGAAAAACCTAAAGGAGACGAACTGAAAGCAATGGCAG 900 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 841 AAGGAAGAGTTATCTCATTCAGTGAAAAACCTAAAGGAGACGACCTGAAAGCAATGGCAG 900 Query 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCGT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 901 TAGACACAACTATTTTAGGACTTTCCAAGGAGGAAGCTGAAAAGAAACCATACATAGCTT 960 Query 961 CAATGGGAGTTTATGTTTTCAAGAAAGAAATACTGTTGAATCTCTTGAGATGGCGTTTCC 1020 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 961 CAATGGGAGTTTATGTTTTCAAAAAAGAAATACTGTTAAATCTCTTGAGATGGCGTTTCC 1020 Query 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CCACAGCAAACGACTTTGGTTCAGAGATTATACCCTTCTCAGCTAAAGAATTCTATGTGA 1080 Query 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACGATAAGATCTTTCTTTGAGG 1140 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1081 ATGCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACAATAAGATCTTTCTTCGAGG 1140 Query 1141 CAAACCTCGCCCTCACTGAGCATCCCGGGGCATTTAGTTTCTACGACGCAGCGAAACCAA 1200 | || || || |||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 1141 CGAATCTTGCACTCACTGAGCATCCTGGGGCATTTAGTTTCTACGACGCGGCAAAACCAA 1200 Query 1201 TTTATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTTGTTGATT 1260 | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1201 TATATACATCAAGGAGAAACCTGCCACCATCAAAAATAGACAACTCTAAGCTCATCGATT 1260 Query 1261 CGATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCACAGCATTGTAGGGA 1320 | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1261 CAATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCATAGCATTGT-GGGA 1319 Query 1321 -TTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 ATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGGACACTGTGATGCTTGGGGCAGAT 1379 Query 1380 TACTACGAAACTGAAGCAGAAGTTGCATCACTACTTGCTGAGGGAAAAGTTCCCATTGGA 1439 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1380 TACTACGAAACTGAAGCAGAAGTTGCAGCACTACTTGCTGAGGGAAACGTTCCCATTGGA 1439 Query 1440 ATAGGAGAGAACACAAAAATTAAAGAATGCATAATAGACAAGAATGCTAGAGTCGGGAAG 1499 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| Sbjct 1440 ATAGGAGAGAACACAAAAATTCAAGAATGCATAATAGACAAGAATGCTAGAGTTGGAAAG 1499 Query 1500 AATGTAATAATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 AATGTAATCATCGCAAACTCGGAGGGAATACAAGAAGCAGATAGGTCATCCGATGGATTT 1559 Query 1560 TACATCAGATCTGGCATTACAGTAATCTTGAAGAATTCAGTAATTAAAGATGGAATTGTG 1619 |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| Sbjct 1560 TACATCAGATCTGGCATTACTGTAATCTTGAAGAACTCAGTAATTAAAGATGGAGTTGTG 1619 Query 1620 ATATGATACTTTTAAGTTTTGATTG------C-GAGAACTAAGAA-TGCAGAGTATAAAA 1671 |||||||||||||||| | | |||| | ||||||||| || ||||||| |||||| Sbjct 1620 ATATGATACTTTTAAGATCTAATTGTAAGAACTGAGAACTAAAAAATGCAGAGCATAAAA 1679 Query 1672 GTCAAAAACTAAATTATTAAAGAAATTTATTTGATAATGAT 1712 ||||| || ||||||| |||||||||||||||||| |||| Sbjct 1680 GTCAACAA-TAAATTAC-AAAGAAATTTATTTGATAGTGAT 1718 > AT5G19221.1 | Symbols: | other RNA | chr5:6464234-6466349 FORWARD LENGTH=844 Length=844 Score = 198 bits (107), Expect = 1e-49 Identities = 171/198 (86%), Gaps = 20/198 (10%) Strand=Plus/Minus Query 744 CAGGATCATCGGCAGAGTGGCGCAGATATAAGCATTTCCTGCATACCAATAGATGACAGA 803 ||||||||||||||||||||||| |||||||||| | | | | || | | ||| Sbjct 288 CAGGATCATCGGCAGAGTGGCGCGGATATAAGCA--T--T---T--C-AT-G--G-TAGA 243 Query 804 CGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACAAAGGAAGAGTTATCTCTTTCAGT 863 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 242 CGTGCCTCAGATTTTGGGCTTATGAAGATAGATGACAAAGGAAGAGTTATCTCATTCAGT 183 Query 864 GAAAAACCTAAAGGAGACGAACT-GAAAGCAA--T--GGCAGTAGACACAACTATTTTAG 918 |||||||||||||||||||| || | ||| | ||||||||||||||||||||||| Sbjct 182 GAAAAACCTAAAGGAGACGACCTCGGG-GCATCCTTAGGCAGTAGACACAACTATTTTAG 124 Query 919 GACTTTCCAAGGAGGAAG 936 |||||||||||||||||| Sbjct 123 GACTTTCCAAGGAGGAAG 106 Score = 167 bits (90), Expect = 4e-40 Identities = 94/96 (98%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 568 AGGTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAACAGGTGGTTCCAAGGTACAG 627 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 615 AGGTTCTTGCGGCCACTCAAACGCCAGGAGAATCTGGTAAAAGGTGGTTCCAAGGTACAG 556 Query 628 CAGATGCAGTTCGGCAATTCCATTGGCTTTTCGAGG 663 ||||||| |||||||||||||||||||||||||||| Sbjct 555 CAGATGCGGTTCGGCAATTCCATTGGCTTTTCGAGG 520 Score = 156 bits (84), Expect = 8e-37 Identities = 88/90 (98%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 483 ACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCGTACAACTCCAATGGA 542 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 779 ACACAATATAACTCAGCATCATTGAACAGGCATTTAGCCCGTGCTTACAACTCCAATGGA 720 Query 543 GTTGGCTTTGGAGATGGCTATGTTGAGGTT 572 ||||||||||||||||||||||||||||| Sbjct 719 CTTGGCTTTGGAGATGGCTATGTTGAGGTT 690 Score = 152 bits (82), Expect = 1e-35 Identities = 91/95 (96%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 654 CTTTTC-GAGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCA 712 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 CTTTTCATAGGATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCA 403 Query 713 CCTCTACAGGATGGATTATATGGATTTTGTACAGG 747 |||||||||||||||||| ||||||||| |||||| Sbjct 402 CCTCTACAGGATGGATTACATGGATTTTATACAGG 368 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84638118870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5