BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488808
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19250.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 1020 0.0
AT5G19230.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 412 2e-114
AT5G19240.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 370 1e-101
> AT5G19250.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6471906-6472945 FORWARD LENGTH=805
Length=805
Score = 1020 bits (552), Expect = 0.0
Identities = 728/809 (90%), Gaps = 27/809 (3%)
Strand=Plus/Plus
Query 1 AGAGAAAAGATTCATCACCACCAAACAATTAATCATCAAAGAAGT-AAGAAGAAGAA--G 57
||||||||||||||||| |||| || || ||||| |||||||| |||||||||||
Sbjct 12 AGAGAAAAGATTCATCATCACC-AA-AA--GATCATAAAAGAAGTAAAGAAGAAGAACTT 67
Query 58 CTCTACAACAATGGCGATTTCCAAGCTCCATCTACTGTTTCTTCTCTCAGTCTTCCTCTC 117
|||| || |||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 68 CTCTGCATCAATGGCGATCTCCAAGCTCCATCTACTCTTCCTTCTCTCAGTCTTTCTCTC 127
Query 118 CCTTCATCGTCCTGTTCTTTCCAACACCGGTAACGATGAAGAAGATGTTCTTCGTACAGG 177
|||||||| || |||||||||| ||||| | |||||||||||||||||||| ||||||
Sbjct 128 CCTTCATCCTCTTGTTCTTTCCGACACC-G--CCGATGAAGAAGATGTTCTTCTTACAGG 184
Query 178 CATCAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAACGCAGA 237
|||||||| |||||||||| |||||||||||||||||||||||| ||| | ||||||||
Sbjct 185 CATCAACAGTTACAGAGCATCACTAAACCTAACAACCTTAATACACAACCACAACGCAGA 244
Query 238 ATGTCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACCACTGG 297
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 245 ATGTCTAGCAGACGAAATCGCAGACCAATTCAAGAACCAACCTTGCACAAACACCACTGG 304
Query 298 CTCATTCTCAGTTCCTGGAACC-CAGCCTGGATTCCCAAACTTGCCTAAGCTCCTCTCCA 356
|||| ||| || ||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 305 CTCAGCCTCTGTCCCTGGAACCACA-CCTGGATTCCCAAACTTGCCTAACCTCCTCTCAA 363
Query 357 AATGCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCA 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 364 AATGCCGCCTCAACCCTACCGTAACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCA 423
Query 417 ACCTTGATCCAAGTCTTGTCTTGACCAATTTCACACA-GTCTCAGTACTCCAAGGACCTC 475
|||||||||| || ||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 424 ACCTTGATCCTAGCCTTGTCTTGACCAATTTCACA-ATGTCACAGTACTCCAAGGACCTG 482
Query 476 AATGATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTTGTCGTT 535
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 483 AATGATTCTAAGTTCACTGGTATTGGTATTGGTTCTGATGATAATTGGATTGTTGTTGTC 542
Query 536 CTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCGGGAGCTTTCTCG 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 543 CTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCAGGAGCTTTCGCG 602
Query 596 TTCGGAGTTAATGGCCTTGTTTCTTCGAGTTTGATGATGATGTTTCTTCTCTTTTGTTTC 655
|||||||||||||||||||||||||| ||||||||| | | | ||||||||||| |||
Sbjct 603 TTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTGATG-T--T-T--CTTCTCTTTTGCTTC 656
Query 656 TTCATGTTTTGAGTCCCATTTTTGG-GTTTTATTTAAACGAGCTCATTGTCTTTGTTTCT 714
||||||||||||||||| ||||||| |||| || ||||| | ||| |||||||||||||
Sbjct 657 TTCATGTTTTGAGTCCCTTTTTTGGTGTTT-ATCTAAACTACCTCGCTGTCTTTGTTTCT 715
Query 715 TATT-ATGTTGTTATTATGGTGATTTGTATGAATTCATATGGCATAAAAGAGAAGATCCC 773
|||| ||||||||||||||||||||||||||||||| || ||||| |||||||| | |
Sbjct 716 TATTTATGTTGTTATTATGGTGATTTGTATGAATTCGTAAGGCATTAAAGAGAATAAC-- 773
Query 774 GTAATATTATCATTAAGTTTCTTCTTCTT 802
|||||||||||||||||||| ||||||
Sbjct 774 --AATATTATCATTAAGTTTCTGCTTCTT 800
> AT5G19230.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6467527-6468484 FORWARD LENGTH=826
Length=826
Score = 412 bits (223), Expect = 2e-114
Identities = 547/694 (79%), Gaps = 60/694 (9%)
Strand=Plus/Plus
Query 58 CTCTACAACAATGGCGATTTCCAAGCTCCATCTACTGTTTCTTCTCTCAGTCTTCCTCTC 117
|||| || |||||||||||||||| ||||||||||| | ||||||||||||||| |||||
Sbjct 100 CTCTGCATCAATGGCGATTTCCAAACTCCATCTACTCTGTCTTCTCTCAGTCTTTCTCTC 159
Query 118 CCTTCATCGTCCTGTTCTTTCCAACACCGGTAACGATGAAGAAGATGTTCTTCGTACAGG 177
||||||||||| |||||||||| |||| | | || ||||| || |||||| |||| |
Sbjct 160 CCTTCATCGTCTTGTTCTTTCCGGCACC-G-ATGGA-GAAGATGACCTTCTTCTTACA-G 215
Query 178 CA-TCAACAATTACAGAGCAGGACTAAACCTAACAACCTTAATACATAACGAAAACGCAG 236
| ||||||| |||||| ||||||||||||||| |||||||| | | |||||||||||||
Sbjct 216 TATTCAACAAATACAGAACAGGACTAAACCTAAAAACCTTAACAAAGAACGAAAACGCAG 275
Query 237 AATGTCTTGCAGACGAAATCGCAGACCAATTCAAGAACCAGCCTTGCACAAACACCACTG 296
||||||| ||||||||| ||| ||||||| | |||||||| || ||||| || | ||||
Sbjct 276 AATGTCTCGCAGACGAAGTCGTAGACCAACTAAAGAACCAACCCTGCAC-AA-A-CACT- 331
Query 297 GCTCATTCTCAGTTCCTGGAACCCAGCCTGGATTCCCAAACTTGCCTAAGCTCCTCTCCA 356
| | ||||| ||| | | ||||| ||| ||| |||||| | |
Sbjct 332 AAT-A-ACTCAGCTCC----AGTC--CCTGG------AAA------TAACCTCCTCGCTA 371
Query 357 AATGCCGCCTCAACCCTACCGTTACT-AGAGACGGTGCGATTTTGCCAGCT-TGTGTTCC 414
||||| | |||||| | |||| || | |||||||||| ||| ||| || | ||| ||||
Sbjct 372 AATGCAGTCTCAACACAACCG-TAGTCAGAGACGGTGTGATCATGCAAG-TCTGTTTTCC 429
Query 415 CAACCTTGATCCAAG--TCTTGTCTTGACCAATTTCACACAGTCTCAGTACTCCAAGGAC 472
|| | |||| ||| | || ||||| |||||||| ||||| || ||||| |||| ||
Sbjct 430 TAAGCATGAT--AAGAACCCTGACTTGAGCAATTTCA-ACAGTGTC-GTACT-CAAGAAC 484
Query 473 CTCAATGATTCTAAGTTCACTGGAATTGGTATTGGTTCTGATGATAACTGGATTGTTGTC 532
| |||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 485 TTGAATGATTCTAAGATCACTGGAATTGGTATTGGTTCTGGTGATATTTGGGTTGTTGTC 544
Query 533 GTTCTCACTACTAGCACACCGGAGGGTAGCTATTCTC---CGGC--CT-CTAACTCGGGA 586
| |||||||| | ||||||||| || ||||||||| | || ||||||| |||
Sbjct 545 ATCCTCACTACAAACACACCGGAAGGCGGCTATTCTCTTTTAACAACTACTAACTCAGGA 604
Query 587 GCTTTCT-CGTTCGGAGTTAATGGCCTTGTTTCTTCGAGTTTGATGATGATGTTTCTTCT 645
|| || | | |||||||||||||||||||||||||| ||||| | || | || |||||
Sbjct 605 GC-TTATGCATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTC-T--TG-T-TT-CTTCT 657
Query 646 CTTTTGTTTCTTCATGTTTTGAGTCCCATTTTTGG-GTTTTATT-TAAACGAGCTCATTG 703
||||||||||||||||||||||||||| ||||||| ||||| || | | | ||| |||
Sbjct 658 CTTTTGTTTCTTCATGTTTTGAGTCCCTTTTTTGGTGTTTT-TTATGT-C-ACCTCGTTG 714
Query 704 TCTTTGTTTCTT-ATTATGTTGTTATTATGGTGA 736
|||||| ||||| | |||||||| ||||||||||
Sbjct 715 TCTTTGGTTCTTGAATATGTTGTGATTATGGTGA 748
> AT5G19240.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr5:6470129-6471062 FORWARD LENGTH=761
Length=761
Score = 370 bits (200), Expect = 1e-101
Identities = 468/591 (79%), Gaps = 43/591 (7%)
Strand=Plus/Plus
Query 58 CTCTACAACAATGGCGATTTCCAAGCTCCATC---TACTGTTTCTTCTCTCAGTCTTCCT 114
|||| || |||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 71 CTCTGCATCAATGGCGATTTCCAAGCTCCATCTAGTACTCTTTCTTCTCTCAGTCTTTCT 130
Query 115 CTCCCTTCATCGTCCTGTTCTTTCCAACACCGGTAACGATGAAGAAGATGT-TCTTCGTA 173
||| |||||||||||||||||||||||||||| | || ||| || | | | || ||
Sbjct 131 CTCTCTTCATCGTCCTGTTCTTTCCAACACCGATG--GA-GAA-AACCT-TCTATT--TA 183
Query 174 CAGGCAT-CAAC-AATTACAGAGCAGGACTAAACCTAACAA-CCTTAATACATAACGAAA 230
||| || |||| ||| |||||| | | ||||||| |||| ||| || | | ||| |||
Sbjct 184 CAGT-ATTCAACCAAT-ACAGAGAATCAGTAAACCTCACAAACCTAAAAA-AGAACAAAA 240
Query 231 ACGCAGAATGTCTTGCAGACGAAATCGCAGACCAATT-CAAGAACCAGCCTTGCACAAAC 289
||||||||||||| ||||||||| ||| ||||||||| || |||||| || |||||||||
Sbjct 241 ACGCAGAATGTCTAGCAGACGAAGTCGTAGACCAATTACA-GAACCAACCCTGCACAAAC 299
Query 290 ACCACTGGCTCATTCT-CAGTTCCTGGAACCCAGCCTGGATTCCCAAACTTGCCTAAGCT 348
|||||||||||| || |||| |||||||| | |||||| ||||||| || ||||| ||
Sbjct 300 ACCACTGGCTCAG-CTTCAGTCCCTGGAACAGATCCTGGAATCCCAAATTTCCCTAACCT 358
Query 349 CCTCTCCAAATGCCGCCTCAACCCTACCGTTACTAGAGACGGTGCGATTTTGCCAGCTTG 408
|||| | ||||||||||||||| | | ||| || ||||||||| ||| |||| || |||
Sbjct 359 CCTCGCTAAATGCCGCCTCAACACAAACGTAACCAGAGACGGTTTGATATTGCAAGTTTG 418
Query 409 TGTTCCCAACCTTGATCCAAGTCTTGTCTTGACCAATTTCACACAGTCTCAGTACTCCAA 468
|| ||| || | | || | | | || ||||| || |||| | || | || || | ||
Sbjct 419 TGCTCCTAAGCATCATTCGACCCCTGACTTGAGCAGTTTCGC-CAATGTCT-TAA-CAAA 475
Query 469 GGACCTCAATGATTCTAAGTTCACTGGA-----A-TTGGTATTGGTTCTGATGATAACTG 522
| |||| ||||||||||||||||||||| | ||||||||| |||||||| || ||
Sbjct 476 GAACCTGAATGATTCTAAGTTCACTGGAGCTGGAGTTGGTATTGATTCTGATGGTATTTG 535
Query 523 GATTGTTGTCGTTCTCACTACTAGCACACC-GGAGGGTAGCTATTCTCCGGCCTCTAACT 581
| ||||| ||| |||||||| | |||||| || ||||||||||||| ||||
Sbjct 536 GCTTGTTACCGTCCTCACTACAAACACACCAGG-GGGTAGCTATTCT---------AACT 585
Query 582 CGGGAGCTTTCT-CGTTCGGAGTTAATGGCCTTGTTTCTTCGAGTTTGATG 631
| |||||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 586 CAGGAGCTTT-TGCATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTGATG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5