BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488829
Length=3878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19400.1 | Symbols: SMG7 | Telomerase activating protein Est... 4948 0.0
> AT5G19400.1 | Symbols: SMG7 | Telomerase activating protein Est1
| chr5:6540003-6545015 FORWARD LENGTH=3919
Length=3919
Score = 4948 bits (2679), Expect = 0.0
Identities = 3220/3473 (93%), Gaps = 69/3473 (2%)
Strand=Plus/Plus
Query 450 AAGGGTCCTTCTAAACCAG-ACGTAATTGCA-AACCACAAGCTGCAGTTCAGAACATTCC 507
||||||||||||||| ||| || ||||||| || | |||||||||||||||||||||||
Sbjct 464 AAGGGTCCTTCTAAAGCAGAAC-AAATTGCACAA-CTCAAGCTGCAGTTCAGAACATTCC 521
Query 508 TTTCAGAAGCAACTGGGTTTTACCATGATATGATCTTAAAAATTAGATCAAAGTATGGTC 567
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 522 TTTCAGAAGCAACTGGGTTTTACCATGACATGATCTTAAAAATTAGATCAAAGTATGGCC 581
Query 568 TTCCCCTGGGTTATTTTTCTGAGGATCAAGAGACTCAAAATTTGGCTGATAAGGATGG-A 626
|||||||||||| |||||||||||||||| ||| |||||||||| ||||||| ||||| |
Sbjct 582 TTCCCCTGGGTTCTTTTTCTGAGGATCAACAGAGTCAAAATTTGTCTGATAAAGATGGAA 641
Query 627 AAGAAGGTACCAGAAGTT-AAATTAGCCTTGGTATCGTGTCATCGTTGCTTAATATACCT 685
||| || || |||||||| ||| ||||||| ||| |||||||||||||||||||||||
Sbjct 642 AAG-AGTTAGCAGAAGTTCAAA-AAGCCTTGAAATCTTGTCATCGTTGCTTAATATACCT 699
Query 686 TGGTGATCTGGCTCGGTATAAAGGATTGTGTGGC-GAGGGGGATTCCAAGAACAGAGAGT 744
||||||||||||||||||||||||| ||| | || ||||||||||||| || |||| |||
Sbjct 700 TGGTGATCTGGCTCGGTATAAAGGAATGTAT-GCAGAGGGGGATTCCAGGAGCAGACAGT 758
Query 745 ATGCTGCTGCTTCAAGTTACTATTTGCAAGCAGCTTCTCTATTGCCAGCCTA-TGGAAAC 803
||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 759 ATGCTTCTGCTTCAAGTTACTATTTGCAAGCAGCTTCTCTATGGCCAGCC-AGTGGAAAC 817
Query 804 CCACATCATCAGCTTGCTATAGTTGCTTCTTATTTGGGGGATGAGTTTACAACAACATAT 863
||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct 818 CCACATCATCAGCTTGCAATAGTTGCTTCTTATTCGAGGGATGAGTTTGTAACAACATAT 877
Query 864 CGTTATTTCCGAAGTTTGGCTGTGGAGAT-TCCTTTCCCAACTGCCCGTGACAACTTGAT 922
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 878 CGTTATTTCCGAAGTTTGGCTGTGGAG-TATCCTTTCCCAACTGCCCGTGACAACTTGAT 936
Query 923 TGTTGCTTTTGAAAAGAATCGTCAGAGTTATGCCCAATTGTTTGTGGCTTCCAAAGACTC 982
|||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 937 TGTTGCTTTTGATAAGAATCGTCAGAGTTATGAAAAATTGTTTGTGCCCTCCAAAGACTC 996
Query 983 ATCCAGGAGGCCGACTGGTAAAGGAAGAGGTAAAGGTGAAGATACTTCATCAAAAGATGC 1042
||||| ||||| |||||||||||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 997 ATCCAAGAGGCTGACTGGTAAAGGAAGAGGGAAAGGTGCAGATATTTCATTGAAAGATGC 1056
Query 1043 GAACTTGGTAGCTGGTCCTTTGAAGGATAAAGTAACTATTTCAAATGAGATGCTCAAAGC 1102
|| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1057 GACCTTGGTAGCTGGTCCTGAGAAGGATAAAGTAACTATTGCAAATGAGATGCTCAAAGC 1116
Query 1103 ATTCTGCACTAGATTTCTTCGTCTCAATGGGATTCTTTTTACCCGAACAAGCCTGGAGAC 1162
|||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1117 ATTCAGCATTAGATTTGTTCATCTCAATGGGATTCTTTTTACCCGAACAAGCCTGGAGAC 1176
Query 1163 ATTCTTAGATGTTCTTGCCTCCACTAGCAGCAGTTTACGAGAGGTCATTTCTTTGGGCTC 1222
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 ATTCTTTGATGTTCTTGCCTCCACTAGCAGCAGTTTACGAGAGGTGATTTCTTTGGGCTC 1236
Query 1223 AGTTGACGAACTGAGTTTGGGCATAGACACCAGTGACAGCGCACTTTTCATTGTTAGACT 1282
|| | | || |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1237 AGCTAAAGAGCTGACTTTGGGCATAGACACCAGTGACAGCGCACTTTTCATTGTTAGAGT 1296
Query 1283 CGTGACAATTCTTATATTTAGCGTCCATAACTCAAAGAAAGAGACAGAAGGTCAGTCATA 1342
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1297 CGTGACAATGCTTATATTTAGTGTTCATAACTCAAAGAAAGAGACAGAAGGTCAGTCATA 1356
Query 1343 TGCAGAGATTGTACAGCGTGTTGAGCCTGCCAGAAACTCCTTAACGGCTAGCTTT-GAGT 1401
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1357 TGCAGAGATTGTACAGCGTGTTGAGCCTGCCAGAAACTCCTTAACAGCTAG-TTTCGAGT 1415
Query 1402 TACTTGGACACGTAATAGAGAAGTGTGTGCAACTGGGAGATCCTTTGTCGAGTTACTTCT 1461
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1416 TACTTGGACTCGTAATAGAGAAGTGTGTGCAACTGGGAGATCCTTCGTCGAGTTACTTTT 1475
Query 1462 TGCCCGGTGTCTTAGTTTTTGTTGAATGGTTGGCCTGTTGTCCTGATGTTGCACTGGGAA 1521
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1476 TGCCTGGTGTCTTAGTTTTTGTTGAATGGTTGGCCTGTTGTCCTGACATTGCACTGGGAA 1535
Query 1522 GTGATCCGGATGATAGACAGACTGCTGTAAGAAATAGCTTTTGGAACCAGTGTGTTACCT 1581
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1536 GTGATCCCGATGATAGACAGACTGCTGTAAGAAATAGCTTTTGGAACCAGTTTGTTGTCT 1595
Query 1582 TGTTTAATCAAATCTTGTCGCTTGGACCTATGTTTATTGATGATGTCGAAGACGAGACTT 1641
| || |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1596 TCTTCAATCAAGTCTTATCGCTTGGACCTACGTTTATTGATGATGTCGAAGACGAGACTT 1655
Query 1642 GCTTCTCAAACATGAGCTTGTATGATGAAAGAGAAACTGAAAACCGACTTGCACTATGGG 1701
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1656 GCTTCTCAAACATGAGCTTGTATGATGAAAGAGAAACTGAAAACCGGCTTGCACTATGGG 1715
Query 1702 AGGACTATGAACTAAGAGGATTCTTGCCACTGCTTCCAGCTCAGACCATTCTCGACTTCT 1761
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1716 AGGACTATGAACTAAGAGGATTCTTGCCACTGCTTCCAGCTCAGACGATTCTCAACTTCT 1775
Query 1762 CAAGGAAACATTCCTTTGGAACTGAAGGTCCCAAGGAAAAGAAAGCTCGTATAAAGAGGA 1821
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CAAGGAAACATTCGTTTGGAACTGAAGGTCCCAAGGAAAAGAAAGCTCGTATAAAGAGGA 1835
Query 1822 T-TTTAGCAGCAGGGAAAGCTTTGACCAGTGTGATCAAAGTTGATCAGAATCATGTATAT 1880
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TCTTT-GCAGCAGGGAAAGCTTTGACCAGTGTGATCAAAGTTGATCAGAATCATGTATAT 1894
Query 1881 TTTGATTCAAAGAAGAAGAAGTTTCTTGTTGGTATAAAACCGTCAGATGACTTGCTGGAT 1940
||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 1895 TTTGATTCAAAGAAGAAGAAGTTTCTTGTTGGTGTAAAACCGGCAGATGACTTTCTGGAT 1954
Query 1941 TCTCATTCAAGCCCACCTAAAGCTTGTAATACTTTGCAAGATAACCAAGTAATGATGA-A 1999
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | |
Sbjct 1955 TCTCATTCAAGCCCACCTAAAGCTTGTAATGCTTTGCAAGATAACCAGGTAATGAT-AGA 2013
Query 2000 TCATAACTCGCCAGTGATGCAGCTTGGTCAGCAGATTTATATGGGTGAGGAGGATGATGA 2059
||||||||||||| | |||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 2014 TCATAACTCGCCAATAATGCAGCTTGATCAACAGATTTATATGGGTGAGGAAGATGATGA 2073
Query 2060 TGATGAAGTAATTGTTTTCAAGCCTCTAGCTACTGAAAAGAAGAAAGAGGCTTCTGACCA 2119
|||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||
Sbjct 2074 TGATGAAGTAATTGTTTTCAAGCCGCTTGTTACTGAAAAGAGGAAAGAGGCTTCTGACCA 2133
Query 2120 AATATATGTTCCTAGTGGAGGCTTCAGGAAACCTGATCAAGTTGCTACTATGGGGGACTT 2179
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2134 AATATATGTTCCTAGTGGAGGCTTCAGGAAATCTGATCAAGTTACTACTATGGGGGACTT 2193
Query 2180 TAAAGCTTTAAGTGGTTCTGATGCAGCTTTTCATGAAAATCAACTTCTGCAAGCTAGAGG 2239
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2194 TAAAGCTTTAAGTGGATCTGATGTAGCTTTTCATGAAAATCAAATTCTGCAAGCTAGAGG 2253
Query 2240 CAATGCGAGTATTCAAGTACCTGCATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCC 2299
|||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 2254 CAATGCGAGTATTCAAGTGCCTGCATCTGTTGGTGCTAACCTTCTGGGACCTCTACAGCC 2313
Query 2300 ATCAACCCAGGCTCAAGCTATGCATATGCAACAAGTTCAGACGCAGGTTCAAGTGCCTGG 2359
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2314 ATCAACCCAGTCTCAAGCTATGCATATGCAACAAGTTCAGACGCAGGTTCAAGTACCTGC 2373
Query 2360 ATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGTCTAAAGCTATGCA 2419
|||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 2374 ATCTGTTGGTGCTAACCTTCTGGGACTTCTTCTGACATCAACCCAGTCTCAAGCTATGCA 2433
Query 2420 TATGCAACAAGTTCAGACGCAGGCAGTGAATCCTCAGCCAGCCCAATCACTAGCTGCTGC 2479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2434 TATGCAACAAGTTCAGACGCAGGCAGTGAATCCTCAGCCAGCCCAATCACTAGCTGCTTC 2493
Query 2480 AAGACTTCAGCCAATTCAATCACAGGTCGCACAACTTCAACCACTGCCATCACGGGTTGT 2539
||||||||||||| ||||||||||||| | | |||||||||||||||||||||||
Sbjct 2494 TCGACTTCAGCCAATACAATCACAGGTCG--C-A---CAACCACTGCCATCACGGGTTGT 2547
Query 2540 GCACTTTCAACAAACTCAGGCACAGCTTTCACATGTTTCAGCGGCCCAGACACAATCTGC 2599
|||||||||||||||||| || ||| |||||||||||||| ||||||| | |||||| |
Sbjct 2548 GCACTTTCAACAAACTCAAGCTCAGGTTTCACATGTTTCACCGGCCCACTCGCAATCTAC 2607
Query 2600 TTCCTTTGTTGGTGGTAGCAAGTGGTCACCAGAGGAAGCTGCTTCTCTTGCTAGTAGCCT 2659
|||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2608 TTCCTTTGGTGGTGGTAGCAAGTGGTCACCCGAAGAAGCTGCTTCTCTTGCTAGTAGCCT 2667
Query 2660 ATCTGGTTTTGCTCAGATGGGTAATGGTCATCTAATGAGGAATGAGTTGCAAGGAAATCA 2719
|||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2668 ATCTGGGTTTGCTCAGCTGGGTAATGGTCATGTAATGAGGAATGAGATGCAAGGAAATCA 2727
Query 2720 TGGAGTTTCCTATTACCCTGCACACCCATTACCGGTCCACCAGTCTTACAATGTCAATGG 2779
||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct 2728 TGGAGTTTCCTATTACCCTGCACACTCATTACCCGTCCACCAGTCTTACAATGGCAATGG 2787
Query 2780 TATGGGTGGTATGCCATATTCTCAGTCACGAACATCTGAAGCTGTATTGACACCCAACAT 2839
|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||
Sbjct 2788 TATGGGTGGTATGCCATATTCTCAGTCAAGAACACCTGAAGCTGTATTCCCACCCAAAAT 2847
Query 2840 TGATACTGTTTTGTCATCCGGAGTTGTTGCTGATGGCCTGGGCGTCCAATCTTCGTTAGC 2899
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2848 TGATCCTGTTTTATCATCCGGAGTTGTTGCTGATGGCCTGGGCGTCCAATCTTCATTAGC 2907
Query 2900 AAAGAAAAATCCAATCAGTAGAGCCATT-AGGCATCTTGGCCCTCCGCCTGGGTTTAACT 2958
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2908 AAAGAAAAATCCAATCAGTAGAGCC-TTCAGGCATCTTGGCCCTCCGCCTGGGTTTAACT 2966
Query 2959 CTGTTCCC-TCTAAGCTGCAAAAGGAGCCAGCACCTGGTTCGGATTTTTCTGGCAACAAC 3017
||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2967 CTG-TCCCAGCTAAGCTGCAAAAGGAGCCAGCACCTGGTTCGGAATTGTCTGGCAACAAC 3025
Query 3018 AATCTACCAGTTGATGATTACAGCTGGTTGGATGGATACCAAGCTCAATCTTCTCGAGGC 3077
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3026 CACCTACCGGTTGATGATTACAGCTGGTTGGATGGATACCAAGCTCAATCTTCTCGAGGC 3085
Query 3078 GCTGGGCCGAACAGTTCTTTGAATTACGTCGCCTCTGGGAAACCAGAACACATGGGTGGT 3137
| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 3086 GTTGGGCTGAACAGTTCTTTGAATTACGCCACCTCTGGGAAACCAGAACACTTGGGTAGT 3145
Query 3138 ACCAGCAATGGACTGAACGGGGTTGCCAATTTTCCGTTTCCTGGAAAACAAGTTCCAACA 3197
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 3146 ACTGGCAATGGACTGAACGGGCCTGCCAACTTTCCGTTTCCTGGAAAACAAGTTCCAACT 3205
Query 3198 TCACAGGTCCAAGCAGATTTTCCTTATTTCCAGAACCCTCAGAAAGATACCTTTGTGGAC 3257
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3206 TCACAGGTCCAAGCAGATTTTCCTTATTTCCAGAACCCTCAGAAAGATAACTTTGTGGAC 3265
Query 3258 AAAAATCATCAATCAGCTCAACTCCCTGAGCAATATCAAGGACATTCGACTTGGTCGAGT 3317
||||| ||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 3266 AAAAACCATCAGTCAACTCAACTCCCCGAGCAATATCAAGGACAGTCGACTTGGTCGAGT 3325
Query 3318 CGTCACTTTGTGTGAGATCAGAATGGAAGAGTAACACGGTAATTGGGAATGATTCAGGTG 3377
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3326 CGTCACTTTGTGTGAGATCAGAATGGAAGAGTAACACGGTAATTGGGAATGATGCAGGTG 3385
Query 3378 AGTGTTACGCAACGTTTATTGCTACCTAACTCCAACTGATCCTTGTTCTGCTGAAGTCTC 3437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3386 AGTGTTACGCAACGTTTATTGCTACCTAACTCCAACTGATCCTTGTTCTGCTGAAGTCTC 3445
Query 3438 TAGTTGGAGTCTTTGTGGCCTTGGCTTCTTGTGGGGTACTTCCTACCCGACGGATTCAGG 3497
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 3446 TAGTTGGAGTCTTTGTGGCCTTGGCTTCTTGTGGGGCACTTCCTACCTGACGGATTCAGG 3505
Query 3498 ACACAGCTCATGTTGGTGAAAGAGATATGTGGTAACAAGAATGAATGGTTCTGTGGAATT 3557
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3506 ACACAGCTCATGTTGGTGAA-GAGATATGTGGTAACAAGAATGAATGGTTCTGTGGAATT 3564
Query 3558 GATAGGAGTAAAGTGCCTTTCTCGTGCTACTTGAGGTGGAGATGTTAGACCTTATGAATA 3617
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3565 GATAGGAGTAAAGTGCCTTTCTCGTGCTACTTGAGGTGGAGATGTTAAACCTTATGAATA 3624
Query 3618 AGAAAGGAA-A--CGTACCTTGTGGCTCACTCTCGATATCTGAAGCAGTTGTTTGCTGTT 3674
||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 3625 AGAAAGGAACATACGTAGCATGTGGCTCACTCTCGATATCTGAAGCAGTTGTTTGCTGTT 3684
Query 3675 TTCTTTTCTTTTTGCGTATAAATGTGTAGCTGTCCGTCCTCTTGCAGCTATCT-T-TCTC 3732
|||||||||| |||||||| | ||||||||||||||||||||||||||||||| | ||||
Sbjct 3685 TTCTTTTCTTCTTGCGTATGACTGTGTAGCTGTCCGTCCTCTTGCAGCTATCTCTCTCTC 3744
Query 3733 TCTTA--TT-CTATGCTCGT----C-TCAA-A--CT-T-CT---CTC----T-GT-T-T- 3768
|||| || || | || | | || | | || | || ||| | || | |
Sbjct 3745 TCTTGGGTTGCTTTACTTTTATTTCCTCTATATTCTATGCTTGTCTCAAACTTGTCTCTG 3804
Query 3769 T---GCTGTGTCGTTTTAAGTTGAACTATCATAAGGTGTGTGACACTTTTCAAGTGCTAA 3825
| |||||||||||||||||||||| |||||||||||||||| ||||| ||| || ||
Sbjct 3805 TTTTGCTGTGTCGTTTTAAGTTGAACCATCATAAGGTGTGTGAAACTTTGCAA-TG--AA 3861
Query 3826 TGAATAAAAAGGGACTCATGTCATAAAACATGATTTGGTGTTGAAATGCTTCC 3878
| || |||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 3862 T-AA-AAAA-GGGACTCATGTGATAAAACATGATTTGGTGTTGAAATACTTCC 3911
Score = 484 bits (262), Expect = 2e-135
Identities = 370/418 (89%), Gaps = 24/418 (6%)
Strand=Plus/Plus
Query 32 ctctctctcGCGGaaaaaaaaaaCCCTAGTTTCTCTCTCCTCTCACCGATTTTTCCATTC 91
||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct 22 CTCTCTCTCGCGG-AAAAAAAAACCCTAGTTTTTCTCTCTTCTCACCGATTTTT-CATTC 79
Query 92 CGATGCTTGTGGTCGCATAG-CCATCCCCGCAGATCTGGTAATTCCGGTTACATATGAAA 150
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 80 CGATGCTTCTGGTCGCATAGCCCATCCCCGCAGATCTGTTAATTCCGGTTACATATGAAA 139
Query 151 TAACCTTTGAAACATTTTGATGGATGATGACTTTGCAGATGGATAAAACTACTGCTTGCT 210
||| | |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 140 TAA-CATTGAAACA-TTTGATGGATGATGACTTTACAGATGGATAAAACTACTGCTTCCT 197
Query 211 CTCCAAGGGAGCGAGCCAAGTCCATACT-TGATAAGACTT-TTGAGTTAGAAAACAAGCG 268
|| || |||||||||||||||||||| | |||| ||| || |||||||| |||||||||
Sbjct 198 CTTCATGGGAGCGAGCCAAGTCCATA-TATGATGAGA-TTGCTGAGTTAGCAAACAAGCG 255
Query 269 TCGGAAGGCTGCTCAGACTCGAAATCCACCTGACTTAAATTTGTGGCAGCAAATT-CGTG 327
|| ||| | ||| | |||||||||||||| |||||||| ||||| || ||||
Sbjct 256 TCAGAA-G--GCT--G----GAAATCCACCTGACCCAAATTTGTTGCAGC-TCTTACGTG 305
Query 328 AGAATTATGAAGCAATAATTCTTG-AAGATCATACCTTTTCTGAGCAGCACAACATTG-A 385
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 306 AGAAGTATGAAGCAATAATTCTTGAAAG-TCATACCTTTTCTGAGCAGCACAACATTGAA 364
Query 386 ATTGACTCTGTGGCAGTTGCATTACAAACGGATTGAAGAGTTTAGATCACACCTCAAT 443
||| |||||||||||||||||||||||||||||||| | ||||||| |||| |||||
Sbjct 365 ATT-CCTCTGTGGCAGTTGCATTACAAACGGATTGAATATTTTAGATTACACATCAAT 421
Score = 156 bits (84), Expect = 2e-36
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2251 TTCAAGTACCTGCATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGG 2310
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 2361 TTCAAGTACCTGCATCTGTTGGTGCTAACCTTCTGGGACTTCTTCTGACATCAACCCAGT 2420
Query 2311 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2346
||||||||||||||||||||||||||||||||||||
Sbjct 2421 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2456
Score = 150 bits (81), Expect = 8e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2347 TTCAAGTGCCTGGATCTGTTGGTTCTAACCTTCTGGGACTTCTTCAGCCATCAACCCAGT 2406
|||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 2265 TTCAAGTGCCTGCATCTGTTGGTGCTAACCTTCTGGGACCTCTACAGCCATCAACCCAGT 2324
Query 2407 CTAAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2442
|| |||||||||||||||||||||||||||||||||
Sbjct 2325 CTCAAGCTATGCATATGCAACAAGTTCAGACGCAGG 2360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 193192897493
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5