BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488852
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19580.1 | Symbols: | glyoxal oxidase-related protein | chr... 3424 0.0
> AT5G19580.1 | Symbols: | glyoxal oxidase-related protein | chr5:6607371-6609626
REVERSE LENGTH=2118
Length=2118
Score = 3424 bits (1854), Expect = 0.0
Identities = 2041/2130 (96%), Gaps = 18/2130 (1%)
Strand=Plus/Plus
Query 1 TCAGGCATCATAACAATCCAA-ATAAGCCTGGGATCCAATTTTCTTATTTCCCCAACCAA 59
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAGGCATCACAACAAT-CAATATAAGCCTGGGATCCAATTTTCTTATTTCCCCAACCAA 59
Query 60 AACAGGGGAAGaaaaaaaaag-aaacaaaaaaatcaaaaaaaaTTTAGAAAATGAGAGCC 118
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 60 AACAGGGGAAGAAAAAAAAAGAAAACAAAAAAATCAAAAAAAA-TTAGAAAATGAAAGCC 118
Query 119 TCAACAAGAGTCATATGGACAGTATCTGTCCTTATGCTCGCTGCTGTGTCCGAGGCCATC 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCAACAAGAGTCATATGGACAATATCTGTCCTTATGCTCGCTGCTGTGTCCGAGGCCATC 178
Query 179 TTCCCTCTACCGTTTCTACCGTTCCTCCCTGGGTTCAACAACGGCTTTAGGGACAATGAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCCTCTACCGTTTCTACCGTTCCTCCCTGGGTTCAACAACGGCTTTAGGGACAATGAG 238
Query 239 GCTGTGAAGGTTGCGAAACCACAGCCTGCAGCCGGTGCGGTAGCTGGTGGAAAAGGCGGA 298
||||| |||||||||||||||||||||||| || || || ||||||||||| || |
Sbjct 239 GCTGTCAAGGTTGCGAAACCACAGCCTGCA---GGAGC---AGTTGGTGGAAAAGCCGCA 292
Query 299 AGAAGGCAGCGAGGCGGCGGTTTAGACGCTCAGACAAACTGGGGTGGTAAGTGGGAGCTC 358
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 293 AGAAGGCAGCGTGGCGGCGGTTTAGACGCTCAGACAACCTGGGGTGGTAAGTGGGAGCTC 352
Query 359 TTCTTGGAAAACTCGGGTGTGTCAGGGATGCATGCGATTCTTATGCCAGTCATCAACAAG 418
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 353 TTCTTGGAAAACTCGGGTGTGTCAGGGATGCATGCGATCCTTATGCCAGTTATCAACAAG 412
Query 419 GTCCAGTACTATGACGCCACCATTTGGAGAATTTCAAAGATTAAGTTGCCTCCAGGCGTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTCCAGTACTATGACGCCACCATTTGGAGAATTTCAAAGATTAAGTTGCCTCCAGGCGTA 472
Query 479 CCATGCCATGTCGTGAACGCCAAGACTAACAAGATCGATTGTTGGGCTCATTCGATTCTC 538
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 473 CCATGCCATGTCGTGGACGCTAAGACTAACAAGGTCGATTGTTGGGCTCATTCGATTCTC 532
Query 539 ATGGATGTCAACACCGGCGCTCTTAAGCCTCTAGGCCTTTCCACCGATACATGGTGCTCA 598
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 533 ATGGATGTCAACACCGGCGCCCTTAAGCCTCTAGGGCTTTCCACCGATACATGGTGCTCA 592
Query 599 TCCGGAGGTCTGACCGTAAATGGTACATTGGTGAGCACTGGAGGATACGGAGGAGGAGCC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCCGGAGGTCTGACCGTAAATGGTACATTGGTGAGCACTGGAGGATACGGAGGAGGAGCC 652
Query 659 AACACCGCGAGGTACCTATCCAGCTGTGAAAACTGCAAGTGGGAAGAATACCCTCAGGCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AACACCGCGAGGTACCTATCCAGCTGTGAAAACTGCAAGTGGGAAGAATACCCTCAGGCA 712
Query 719 TTGGCTGCCAAGAGATGGTACTCAACGCAAGCCACTCTCCCTGACGGAAAGTTCTTCGTG 778
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 713 TTGGCCGCGAAGAGATGGTACTCAACGCAAGCAACTCTCCCTGACGGAAAGTTCTTCGTG 772
Query 779 ATTGGTGGAAGAGACGCCTTGAACTACGAATACATTCCTGAGGAGGGACAAAACAACAGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ATTGGTGGAAGAGACGCCTTGAACTACGAATACATTCCTGAGGAGGGACAAAACAACAGG 832
Query 839 AAGCTCTATGACTCATTGCTCCTCAGGCAAACAGATGACCCGGAAGAAAACAACCTTTAC 898
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 AAGCTCTTTGACTCATTGCTCCTCAGGCAAACAGACGACCCGGAAGAAAACAACCTTTAC 892
Query 899 CCTTTCGTGTGGCTCAACACCGACGGTAACCTCTTCATTTTCGCTAACAACCGATCCATC 958
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CCTTTCGTCTGGCTTAACACCGACGGTAACCTCTTCATTTTCGCTAACAACCGATCCATC 952
Query 959 CTTCTAAGCCCCAAAACAAACCAAGTCATCAAGGAGTTCCCTCAGCTCCCAGGTGGTGCC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTTCTAAGCCCCAAAACAAACCAAGTCATCAAGGAGTTCCCTCAGCTCCCAGGTGGTGCC 1012
Query 1019 CGTAACTACCCGGGATCAGGTTCTTCTGCTCTCCTCCCCATCCAACTTTACGTGAAAAAC 1078
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1013 CGTAACTACCCGGGATCAGGTTCTTCCGCACTCCTCCCCATCCAACTTTACGTGAAAAAC 1072
Query 1079 CCCAAGGTCATCCCTGCCGAGGTCCTCGTCTGTGGTGGTTCCAAACAAGACGCGTATTAC 1138
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1073 CCCAAGGTCATCCCAGCCGAGGTTCTCGTCTGTGGTGGTTCCAAACAAGACGCGTATTAC 1132
Query 1139 AAGGCTGGTAAAAGGGTATTCGAACCAGCACTACAAGACTGCGCCAGGATAAGGATCAAC 1198
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AAGGCTGGTAAAAAAATATACGAACCAGCACTACAAGACTGCGCCAGGATAAGGATCAAC 1192
Query 1199 AGCGCAAAGCCACGATGGAAGACGGAGATGATGCCGACCCCACGAATCATGAGTGACACT 1258
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1193 AGCGCAAAGCCACGATGGAAGACGGAGATGATGCCAACCCCACGAATCATGAGTGATACT 1252
Query 1259 GTCATCCTCCCCAACGGAGACATACTTCTAGTCAACGGAGCTAAACGTGGTTGTTCAGGC 1318
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTCATCCTCCCTAACGGAGACATCCTTCTAGTCAACGGAGCTAAACGTGGTTGTTCAGGC 1312
Query 1319 TGGGGCTATGGTAAAGACCCTGCCTTTGCTCCCCTTTTGTACAAGCCCCATGCT-CTACG 1377
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1313 TGGGGATATGGTAAAGACCCTGCCTTTGCTCCCCTCTTGTACAAGCCCCATGCTGC-ACG 1371
Query 1378 TGGCAAGCGTTTCAGAGAGCTCAAGCCCTCCACCATCCCACGTATGTACCACTCCACCGC 1437
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1372 TGGCAAGCGTTTCAGACAGCTCAAGCCCACCACCATCCCACGTATGTACCACTCCAGCGC 1431
Query 1438 CATCATTCTCCCTGACGGTAAGGTTCTTGTCGGTGGCAGCAACACCAACGACGGTTACAA 1497
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CATCATTCTTCCAGACGGTAAGGTTCTTGTCGGTGGCAGCAACACCAACGACGGTTACAA 1491
Query 1498 GTACAACGTTGAGTTCCCTACGGAGCTTCGTGTTGAGAAATTCTCCCCACCTTACCTCGA 1557
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1492 GTACAACGTTGAGTTCCCAACGGAGCTTCGCGTTGAGAAATTCTCCCCACCTTACCTCGA 1551
Query 1558 CCCGGCTCTAGCCAACATTAGGCCAAAGATCGTAACCACCGGCACCCCAAAACAGATCAA 1617
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1552 CCCGGCTCTAGCCAACATAAGGCCAAAGATCGTCACCACCGGCACCCCAAAACAGGTCAA 1611
Query 1618 ATACGGACAATTCTTCAACGTGAAGGTCGACCTTAAACAAAAGGGAGCCACCAAGCAGAA 1677
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1612 ATACGGACAATTCTTCAACGTGAAGGTCGACCTTAAAGAAAAGGGAGCAACCAAGG-GAA 1670
Query 1678 -TCTCAAGGTGACCATGTTAGCCCCTGCCTTCACAACACACAGTATCTCAATGAACATGA 1736
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATCTCAAGGTTACCATGTTAGCCCCTGCCTTCACAACACACAGTATCTCAATGAACATGA 1730
Query 1737 GGATGCTCATCTTGGGTGTCGCTAATGTCAAACCTGCTGGTGCCGGTTATGATATCCAGG 1796
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1731 GGATGCTCATCTTGGGTGTCAATAATGTCAAACCTGCTGGTGCCGGTTACGATATCCAGG 1790
Query 1797 CCGTCGCACCACCAAATGGAAACATTGCTCCACCGGGTTACTATCTTATCTTTGCCATCC 1856
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1791 CCGTTGCACCACCAAATGGAAACATCGCTCCACCGGGTTACTATCTTATCTTTGCCATCT 1850
Query 1857 ACAAAGGTGTTCCCAGCACTGGAGAATGGATTCAGATCGTCTAATGATGATGATTTTTAC 1916
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1851 ACAAAGGTGTTCCCAGCACTGGAGAATGGATTCAGGTCGTCTAATGACGATAATTTTTAC 1910
Query 1917 CCATTTTGTCTTATGGCCGTAACATCTTAATATaaaaaaaTCACGTAATATCAGtttttt 1976
||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1911 CCATTTTGTCTTATGACCGTAACATCTTAATATAAAACAATCACATAATATCAGTTTTTT 1970
Query 1977 tttCCTTCTATATAT-TTGTATATGCCACCATTAATGGATCCAAATTCCTTGTGTTTTCT 2035
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1971 TTTCCTTCTATATATATTGTTTATGCCACCATTAATGGATCCAAATTACTTGTGTTTTCT 2030
Query 2036 TTAA-TTCTTTAAACTTTATCCGTTCATGTAAAACCTTATCGGTGAGTTTTTATTCCTAA 2094
|| | |||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||
Sbjct 2031 TTCACTTCTATAAACTTT-TCCGTTCATGTAAA-CCTTTTCGGTGAGTTTTTATGACTAA 2088
Query 2095 ATTTTGTATTGGAGAAATTCTTTTATTATT 2124
||||||||||||||||||||||||||||||
Sbjct 2089 ATTTTGTATTGGAGAAATTCTTTTATTATT 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5