BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488853
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19590.1 | Symbols: | Protein of unknown function, DUF538 |... 920 0.0
> AT5G19590.1 | Symbols: | Protein of unknown function, DUF538
| chr5:6610730-6612103 REVERSE LENGTH=735
Length=735
Score = 920 bits (498), Expect = 0.0
Identities = 637/701 (91%), Gaps = 22/701 (3%)
Strand=Plus/Plus
Query 1 GTGGCTCGAAGCTTTTCTTTC-TC-CTTCACAAAAATGAAGATTTCTCTCTTCCTTCTCT 58
|||| |||||||||||| | | || | | |||||||||||||||||||||||| ||||
Sbjct 1 GTGGTTCGAAGCTTTTC-TCCTTCACAAAAAAAAAATGAAGATTTCTCTCTTCCTCCTCT 59
Query 59 CTGTACTCATTCTCTTACCCGTTTCCCTACAGGATCCGAGTCCTGAAGTCAAGAAACCGA 118
|| | ||||||||||||||| | |||||||| ||||| | |||||||||||||||||| |
Sbjct 60 CTATCCTCATTCTCTTACCCATCTCCCTACAAGATCCTACTCCTGAAGTCAAGAAACCAA 119
Query 119 CTCGTGCACACGCAGAGCTCACGAATCATGGGTTCCCAATTGGACTCCTCCCTTTATCCG 178
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 120 CTCGTGCACACGCAGAGCTCACGAATCATGGATTCCCAATTGGACTCCTACCTTTATCTG 179
Query 179 TCAAAGATTACTTCCTCAACCAAACCTCCGGCGACTTCTCTCTTTTCCTCAACGGCGCAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TCAAAGATTACTTCCTCAACCAAACCTCCGGCGACTTCTCTCTTTTCCTCAACGGAGCAT 239
Query 239 GCAAAATCACGCTTCCTCCTGATAACTACATCGCTACTTATTCGAACAAAGTAACGGGGC 298
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 240 GCAAAATCACGCTTCCACCTGATAACTACATCGCTACTTATTCTAACAAAGTAACGGGTC 299
Query 299 GGATCTCTCAGGGTAAGATCGCGGAGCTCCAAGGGATTCGGGTTCGGGCGTTTTTCAAGT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGATCTCTCAGGGTAAGATCGCGGAGCTCCAAGGGATTCGGGTTCGGGCGTTTTTCAAGT 359
Query 359 CGTGGTCTATCACTGGGATTCGATCTTCTGGAGATAATCTTGTGTTTGAGGTTGCTGGGA 418
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CGTGGTCTATTACTGGGATTCGATCTTCTGGAGATAATCTTGTCTTTGAGGTTGCTGGGA 419
Query 419 TAACTGCTAAATACCCTTCGAAGAATTTCGATGAGAGTCTTGATTGTGAAGGGAATCGAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 TAACTGCTAAATACCCTTCGAAGAATTTCGATGAGAGTCTTGATTGTGAAGGGAAACGAT 479
Query 479 CATCTTCTTGATTTCAATT-GAAACAAAAAGGGAAGAT-TGCGAAGGCAGT-AGCAATAA 535
| ||||||||||||||||| ||| ||| || | ||| || |||||||| | | | ||
Sbjct 480 CTTCTTCTTGATTTCAATTTGAATTAAA--GGCA-GATCTGTGAAGGCAGGGATCGACAA 536
Query 536 GTGAAAAATGGTTTGTAATATATT-TATCTCCATCCGATCAAA-CAAAGCTTGTAATGTA 593
||||| |||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||
Sbjct 537 GTGAAGAATGGTTTGTAATATATTGTATCTCCATTAGAT-AAATCAAAGCTTGTAATGTA 595
Query 594 AAATCACAATTGAACCACGACTGTATTCTCTGCAAACTAAGGGTTTCA-TG------G-A 645
||| | |||| |||||||||||| ||||||||||||||||||||||| || | |
Sbjct 596 AAACCGCAAT--AACCACGACTGTGTTCTCTGCAAACTAAGGGTTTCAATGTTTCATGGA 653
Query 646 GGCTTGTAAGTTGTCACTCAAATATGGGTTGAAATGTGATA 686
|||||||||||||||| ||||||||||||| ||||||||||
Sbjct 654 GGCTTGTAAGTTGTCAATCAAATATGGGTTAAAATGTGATA 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5