BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488869 Length=1191 Score E Sequences producing significant alignments: (Bits) Value AT5G19760.1 | Symbols: | Mitochondrial substrate carrier famil... 1812 0.0 > AT5G19760.1 | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679306-6682001 REVERSE LENGTH=1338 Length=1338 Score = 1812 bits (981), Expect = 0.0 Identities = 1144/1217 (94%), Gaps = 34/1217 (3%) Strand=Plus/Plus Query 1 TTCATCGtctcctctccaccaccaagtgaatctc-tt-tctctctctttttctccgcgga 58 ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| Sbjct 42 TTCATCGTCTCCTCT---CCACCAAGTGAATCTCTTTCTCTCTCTCTTTTTCTCCGCGGA 98 Query 59 aggaatctcttctttctGGTTGCGTTTGAGTCCGTACGAAAA-ACAA-AAAGGAGAGAGA 116 |||||||||||| ||||||||||||||||||||||||||||| | || ||| |||||||| Sbjct 99 AGGAATCTCTTC-TTCTGGTTGCGTTTGAGTCCGTACGAAAACAAAAGAAAAGAGAGAGA 157 Query 117 TGTCGGAAGAGAAGAAAGCTCCAATTAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 176 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 158 TGGCGGAAGAGAAGAAAGCTCCAATCAGTGTCTGGACTACCGTGAAGCCCTTCGTCAATG 217 Query 177 GCGGAGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATCAAGGTGA 236 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 218 GCGGTGCCTCTGGTATGCTCGCTACTTGCGTTATCCAGCCGATCGACATGATTAAGGTGA 277 Query 237 GGATTCAACTAGGTCAGGGATCTGCAGCTAGTATAACCACGAACATGCTTAAGAATGAGG 296 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 278 GGATTCAACTTGGTCAGGGATCTGCAGCCAGTATAACCACCAACATGCTTAAGAATGAGG 337 Query 297 G-TTTCGGTGCCTTCTACAAGGGATTATCTGCTGGTTTGCTGAGGCAAGCAACTTACACC 355 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 338 GCGTT-GGTGCCTTCTACAAGGGATTATCTGCTGGGTTGCTGAGGCAAGCAACTTACACG 396 Query 356 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAACGATGGA 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 397 ACAGCCCGTCTTGGATCATTCAAGTTGCTGACTGCAAAGGCAATTGAGTCTAATGATGGA 456 Query 416 AAGCCTCTACCGCTGTATCAGAAGGCTCTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 475 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 457 AAGCCTCTACCGCTGTATCAGAAGGCACTATGTGGTCTGACAGCTGGTGCTATTGGTGCT 516 Query 476 TGTGTTGGTAGTCCAGCCGATCTTGCACTTATCAGAATGCAAGCTGATAATACTTTGCCG 535 || || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 517 TGCGTCGGTAGTCCAGCCGATCTAGCACTTATCAGAATGCAGGCCGATAATACTTTGCCG 576 Query 536 TTAGCTCAGCGCAGGAATTATACCAATGCCTTCCATGCGCTTTA-CCGTATTAGCGCTGA 594 |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct 577 CTAGCTCAGCGCAGGAATTATACCAATGCTTTCCATGCGC-TTACCCGTATTAGCGCTGA 635 Query 595 TGAAGGAGTTTTAGCACTTTGGAAAGGATGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 654 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 636 TGAGGGAGTTTTAGCACTTTGGAAAGGGTGTGGGCCCACTGTGGTCAGAGCTATGGCTTT 695 Query 655 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 GAACATGGGAATGCTTGCATCTTATGATCAAAGTGCTGAATACATGAGAGATAATCTTGG 755 Query 715 TCTCGGGGAGATGTCTACGGTCGTAGGGGCAAGTGCTGTTTCGGGGTTCTGCGCTGCGGC 774 | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 756 TTTCGGGGAGATGTCTACGGTCGTAGGAGCAAGTGCTGTTTCTGGGTTCTGCGCTGCGGC 815 Query 775 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 TTGCAGTCTGCCATTTGACTTTGTCAAAACTCAGATTCAGAAAATGCAACCGGATGCTCA 875 Query 835 GGGAAAATATCCATACACAGGTTCACTTGATTGTGCGATGAAAACCTTAAAAGAAGGGGG 894 ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 876 AGGAAAGTATCCATACACAGGTTCGCTCGATTGTGCGATGAAAACCTTAAAAGAAGGAGG 935 Query 895 ACCTCTGAAATTTTACTCAGGTTTCCCTGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 954 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 936 ACCTCTGAAATTTTACTCGGGTTTCCCAGTTTACTGTGTCAGGATTGCCCCTCACGTCAT 995 Query 955 GATGACATGGATCTTCCTGAACCAGATTACGAAACTTCAAAAGAAGATTGGTATGTGA-- 1012 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 996 GATGACATGGATCTTCCTAAACCAGATTACGAAATTTCAAAAGAAGATTGGTATGTGAGG 1055 Query 1013 AA-AA-TA-AG-A---------T--GA-GA-A-GAACGAAAACACAATTGGAATTGTGTT 1054 || || || || | | || || | ||||||||||||||||||||||||||| Sbjct 1056 AACAAATACAGCAGCAAAAAAATAAGATGAGAAGAACGAAAACACAATTGGAATTGTGTT 1115 Query 1055 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCGTATTATTGTAGCTGTTTGA 1114 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1116 CATTTGCTTTTTAATCATATACATAACCTGCCTTAAAAGCATATTATTGTAGCTGTTTGA 1175 Query 1115 AACTTTGATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTATAAAATTTTCTTCTTT 1174 | |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1176 A-CTTTAATTTTTTGTTTCGGTCGGTGATTGGTCCGGTGAATTTTAAA-TTTTCTTCTTT 1233 Query 1175 GGTGGAAGTTGAAGACA 1191 |||||||||| |||||| Sbjct 1234 GGTGGAAGTTTAAGACA 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58483634925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5