BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488879
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19850.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2063 0.0
> AT5G19850.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:6709734-6711673 REVERSE LENGTH=1333
Length=1333
Score = 2063 bits (1117), Expect = 0.0
Identities = 1261/1330 (95%), Gaps = 12/1330 (1%)
Strand=Plus/Plus
Query 1 AAAATTCATGGCGAAGACTAGCATTTTTGCTGCTCTACCCCTTACCAATTTCGAATTCCC 60
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 5 AAAATTCATGGCGAAGACTAGCATTTTTGCAGCTCTACCCTTTACCAACTTCGAATTCCC 64
Query 61 GTCGCTGTTCCGTGTCAAGAACTCTTCGATTATCAGTTTCACCGAAACCCATTTACTCCG 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 65 GTCGCTGTTCCGTGTCAAGAACTCTTCGATTATCAGTTTCAGCGAAACCCATTTTCTCCG 124
Query 121 ACAATCGATTTCGACCGGTATCGTAAGATCTTCGACTCCA-AGGGGAATTGGGTCCGTCT 179
|||||| |||||||||| |||||||||||| ||||| | |||||||||| ||||||||
Sbjct 125 ACAATCAATTTCGACCGCAATCGTAAGATCTCCGACT-AAGAGGGGAATTGTGTCCGTCT 183
Query 180 CATGTTCTTCGGTCACGGACGAAGCTTCTTCTGAAGAGCTACAAGTTCGTACCTTGACAT 239
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 184 CATGTTCTTCCGTCACGGACGAAGCTTCTTCTGAAGAGCTACAAGTTCGAACCTTGACAT 243
Query 240 GGAAGTGGAAAGGTTATTCGATAAGATATCAATGTGCTGGAACCAGTGGCCCTGCCTTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 244 GGAAGTGGAAAGGTTATTCGATAAGATATCAATGTGCTGGAACCAGTGGCCCTGCTTTGG 303
Query 300 TCTTAGTTCATGGTTTCGGTGCTAACAGTGATCACTGGAGGAAGAACACACCTATTCTTG 359
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 304 TCTTGGTTCATGGTTTCGGTGCTAACAGTGACCATTGGAGGAAGAACACACCTATTCTTG 363
Query 360 GGAAAACACATAGGGTTTACTCAATCGATCTTATCGGATATGGATACTCCGATAAACCGA 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGAAAACACATAGGGTGTACTCAATCGATCTTATCGGATATGGATACTCCGATAAACCGA 423
Query 420 ATCCTCGTGAGTTTGGTGGAGAACCATTCTACACTTTTGAGACATGGGGTGAGCAACTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATCCTCGTGAGTTTGGTGGAGAACCATTCTACACTTTTGAGACATGGGGTGAGCAACTCA 483
Query 480 ATGATTTCTGTCTGGATGTGGTCAAAGATGAAGCCTTCTTTATATGCAACTCTATTGGAG 539
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 484 ATGATTTCTGTCTGGATGTGGTCAAAGATGAAGCTTTCTTTATTTGCAACTCTATAGGAG 543
Query 540 GACTTGTTGGTCTTCAGGCAGCAGTAAGTAAGCCAGAGATATGCAGAGGGCTTATGCTTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GACTTGTTGGTCTTCAGGCAGCAGTAAGTAAGCCAGAGATATGCAGAGGGCTTATGCTTA 603
Query 600 TAAACATATCTCTCCGCATGCTTCATATCAAGAAACAACCATTGATTGGAAGACCTTTCA 659
| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 604 TTAACATATCCCTCCGGATGCTTCATATCAAGAAACAACCATTCATTGGAAGACCTTTCA 663
Query 660 TCAAATCATTCCAGAATTTACTTAGGAATACTCCGGTTGGAAAATTATTTTTCAAGAGCA 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 664 TCAAATCATTCCAGAATTTACTTAGGAACACTCCGGTTGGAAAATTATTTTTCAAGAGCA 723
Query 720 TTGCTAGACCGGAGACAGTAAAAAGCATTCTCTGCCAGTGTTACCATGATAGCTCGCAAG 779
|||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 724 TTGCTAAACCAGAGACAGTAAAGAGCATTCTTTGCCAGTGTTACCATGATAGCTCGCAAG 783
Query 780 TGACTGATGAACTAGTTGAGGCAATTCTACGTCCAGGGCTTGAGCCTGGTGCAGTTGATG 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGACAGATGAACTAGTTGAGGCAATTCTACGTCCAGGGCTTGAGCCTGGTGCAGTTGATG 843
Query 840 TCTTCCTCGAATTCATCTGTTACTCCGGTGGACCGCTTCCAGAGGATTTACTCCCACTAG 899
||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 844 TCTTCCTTGAATTTATCTGTTACTCCGGAGGACCACTTCCAGAGGATTTACTCCCACTAG 903
Query 900 TCAAGTGCCCAGTTCTAATTGCATGGGGAGAGAAAGATCCATGGGAGCCAATCGAGCTTG 959
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 904 TCAAGTGCCCGGTTCTAATTGCATGGGGAGAGAAAGATCCATGGGAGCCCATCGAGCTTG 963
Query 960 GACGAGCGTATAGCAATTTTGACGCGGTTGAAGATTTCATTGTTCTTCCTGATGCCGGCC 1019
||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 964 GACGAGCATATAGCAATTTTGACGCGGTTGAAGATTTCGTTGTTCTTCCAGATGCCGGCC 1023
Query 1020 ACTGTCCTCAGGACGAGAAGCCGGAGATGGTGAACCCACTTATTGAATCATTCGTTGCGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ACTGTCCTCAGGACGAGAAGCCGGAGATGGTGAACCCACTTATTGAATCATTCGTTGCGA 1083
Query 1080 GACATTGAAAGTCCAATACATCCATC-CCCCAGACATTTAACCTCTCTAGATTTTTA-TA 1137
|||||||||||||||||||||||||| |||||||||||| | || ||||| |||||| ||
Sbjct 1084 GACATTGAAAGTCCAATACATCCATCTCCCCAGACATTTGATCTTTCTAG-TTTTTAATA 1142
Query 1138 TATCTGTACAGAAACACATCTTGTCCTGCACGAACACT--GAGTTGTGCATGAACAGTCG 1195
|||||||||||||||| | | |||||||||||||| |||||||||||||||||||
Sbjct 1143 TATCTGTACAGAAACAG-TATA--CCTGCACGAACACTCAGAGTTGTGCATGAACAGTCA 1199
Query 1196 --GGTGAGATTTTTCAGAAGTGACAAAACTGTGATTGTATGGGTACAGATGTTGATGGAG 1253
||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1200 CAGGTGAGATTTTTCAGTAGTGACAAAACTGTGATTGTAAGGATACAGATGTTGATAGAG 1259
Query 1254 TAAAGAGCTTGGTAAGAGAAACAAACCTTTTTATTCCAAACCCAATGGAAATACAAGACT 1313
||||||| | | |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1260 TAAAGAGGTCGATAAGAGAAACAAACCTTTTTCTTCCAAACTCAATGGAAATACAAGACT 1319
Query 1314 TTCAAGTTTC 1323
|||| |||||
Sbjct 1320 TTCATGTTTC 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5