BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488903 Length=1528 Score E Sequences producing significant alignments: (Bits) Value AT5G20050.1 | Symbols: | Protein kinase superfamily protein | ... 2364 0.0 > AT5G20050.1 | Symbols: | Protein kinase superfamily protein | chr5:6774302-6775845 FORWARD LENGTH=1544 Length=1544 Score = 2364 bits (1280), Expect = 0.0 Identities = 1466/1551 (95%), Gaps = 32/1551 (2%) Strand=Plus/Plus Query 1 GAAATATTTCGTCTTTGTTCTGGTCACGAGAGTG-TTCATCAGAAGGaaaaaaaaaaTGA 59 ||||||||||||||||||||| ||||| |||||| || ||| | ||| |||||| Sbjct 1 GAAATATTTCGTCTTTGTTCTCGTCACCAGAGTGCTT-ATC----TG---AAAGAAATGA 52 Query 60 TGTCAGAGAAGCTCTAAAAG-CCTTCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 118 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 53 AGTCAGAGAAGCTCTAAAAGACC-TCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 111 Query 119 TATATTAATCTTAGCCCTTGTCGTGGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 178 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 112 TATATTAATCTTAGCCCTTGTCGTAGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 171 Query 179 CAAAACATTCTATCTCATCGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 238 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CAAAACATTCTATCTCATAGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 231 Query 239 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTTGTCTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 232 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTCGCCTC 291 Query 299 CGAAGGCAGAGAGCTCCGAATCGAGTACAGTTTCTTGAGAAAAGTCGCAGGGGTTCCAAC 358 ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 292 CGAAGGCAGAGAGCTACGAATCGAGTACAGTTTCTTGAGAAAAGTCGCCGGAGTTCCAAC 351 Query 359 GAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 CAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 411 Query 419 AGGCGGTTCTGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 478 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGGCGGTTCCGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 471 Query 479 AAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 GAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 531 Query 539 TTCTGTTCAGCACAAGAACCTAGTTCGTCTTTACGGTTATTCGTCTGCGGTTTCCGCGAA 598 ||| |||||||||||||| ||||||||||||||||||||||||||| || | |||||| Sbjct 532 TTCCGTTCAGCACAAGAATCTAGTTCGTCTTTACGGTTATTCGTCTTCGACTAGCGCGAA 591 Query 599 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 651 Query 659 TCCGGATAGAGGAAACAGAAGAAGATGCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 718 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 652 TCCGGATAGAGGAAACAGAGGAAGATCCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 711 Query 719 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 771 Query 779 GATCTTGCATCTTGATGTTAAACCTGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 838 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 772 GATCTTGCATCTCGATGTTAAACCCGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 831 Query 839 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTGCTAACGGA 898 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 832 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTACTAACGGA 891 Query 899 TATCCGTGGGACTCGGGGGTATTTAGCCCCCGAATGGCTTCTTGAACACGGTATTTCGGA 958 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 892 TATCCGTGGTACTCGGGGGTATTTAGCCCCCGAGTGGCTTCTTGAACACGGTATTTCGGA 951 Query 959 GAAATCCGACGTTTACAGCTACGGGATTGTGTTACTAGAAATGATCGGAGGACGGAGAAG 1018 ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 952 GAAATCCGATGTGTATAGCTACGGGATTGTGTTACTAGAGATGATCGGAGGACGGAGAAG 1011 Query 1019 CATTTCAAGGGTAGAGGTTAAGGAAACAAAAAAGAAGAAGTTGGAGTATTTCCCAAGGAT 1078 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1012 CATTTCAAGGGTAGAAGTTAAGGAAACAAAAAAGAAGAAATTAGAGTATTTCCCAAGGAT 1071 Query 1079 TGTGAACCAAAAGATGAGAGAAAGAAAAATAATGGAGATTGTAGATCAAAGGCTGATAGA 1138 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 1072 TGTGAACCAAAAGATGAGAGAAAGAAAGATAATGGAGATTGTTGATCAAAGGCTGATTGA 1131 Query 1139 AGCCAATGAGGTAAATGAAGAGGAAGTGATGAAATTGGCGTGTGTGGCTTTGTGGTGTAT 1198 || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1132 AGTTAATGAGGTAGATGAAGAGGAAGTGATGAAATTGGTGTGTGTGGCTTTGTGGTGTAT 1191 Query 1199 ACAAGAGAAATCTAAGAATAGGCCTGATATGACTATGGTAATTGAAATGATTGAAGGGAG 1258 ||||||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||||| Sbjct 1192 ACAAGAGAAGTCTAAGAAAAGGCCTGATATGACTATGGTTATTGAGATGCTTGAAGGGAG 1251 Query 1259 AGTTCCGGTGAACGAGCCGCCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1318 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 AGTTCCGGTGAACGAGCCACCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1311 Query 1319 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAATAAATATCCCGAAATTGCAAATCCA 1378 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1312 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAGTAAATATCCCGAAATTGCAAATCCA 1371 Query 1379 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATATCTCC 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1372 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATCTCTCC 1431 Query 1439 ACGCTAG--ATTTTTGT-T-TT------G-TTT-----CAATCTAAAACTGAGTATGTTT 1482 ||||||| |||||||| | || | ||| ||||| |||||||||||||||| Sbjct 1432 ACGCTAGTTATTTTTGTGTGTTCATATTGGTTTTGTTTCAATCAAAAACTGAGTATGTTT 1491 Query 1483 GGTGTGTTACTATTAATCA---TTTGATATGTA-A-TAAACACAATTTATA 1528 ||||||||||||||||||| ||||||| ||| | ||||||||||||||| Sbjct 1492 GGTGTGTTACTATTAATCAACCTTTGATACGTATAATAAACACAATTTATA 1542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75401218590 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5