BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488915 Length=791 Score E Sequences producing significant alignments: (Bits) Value AT5G20130.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1118 0.0 > AT5G20130.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6797440-6798899 FORWARD LENGTH=853 Length=853 Score = 1118 bits (605), Expect = 0.0 Identities = 743/805 (92%), Gaps = 27/805 (3%) Strand=Plus/Plus Query 1 ATTGTGGTGGGATAAGGGAGA-G--GATAGA--GATGGGACACGTAATGAGGCTGCTGAT 55 ||||||||||||||||||||| | || ||| |||||||||||||| |||||| |||| Sbjct 12 ATTGTGGTGGGATAAGGGAGAGGAAGAGAGAGCGATGGGACACGTAACGAGGCTATTGAT 71 Query 56 AAACCCTTCTTCTTCCTCCTCGCCTCTTCTCCACCTCCGTTGTTCCCACCGGACTCTTGA 115 ||||||||| || | |||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 72 AAACCCTTCGTC-T--TCCTCGCCACTTCTCCACCTCCGTTGTTGCCACCGGACTCTTGA 128 Query 116 CCCCAACTCTGTCTTCTCTCTTCGAACCGCAATTACCAAAAGCAAGGCACGATTCTCTTG 175 ||| |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| Sbjct 129 CCCTAACTCTGTCTTCTCTCTTCGAACCTCAATCACCAAAAGCAAGGGACGATTCTCTTG 188 Query 176 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 248 Query 236 TGGTGGGAAGAAAAATGAGTTTGACAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 295 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 249 TGGTGGGAAGAAGAATGAGTTTGAGAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 308 Query 296 CGGTGGCGGAAA---TGGT--A----GAGGAGGAGGAGGCTGGTTTGGAGGTGGCGGTTG 346 |||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| Sbjct 309 CGGTGGCGGAAATGGTGGTAAAGGTGGAGGAGGAGGAGGTTGGTTTGGAGGTGGTGGTTG 368 Query 347 GTTCAGTGGCGACCATTTCTGGAATGAAGCACAACAGATTGCCTTTACCCTCTTAGCAAT 406 ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 369 GTTTAGTGGCGACCATTTCTGGAAAGAGGCACAACAGATTGCCTTTACCCTCTTAGCAAT 428 Query 407 ACTAGTCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 466 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ACTTGCCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 488 Query 467 GTTGTTGTATGCGTTGCGAGGAACACGAGAAGGTTTGACTTCTCTAAGCTCCAAACTCAT 526 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 489 GTTGTTGTATGCGTTGCGAGGAACACGGGAAGGTTTGTCTTCTCTAAGCTCCAAACTCAT 548 Query 527 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAACAAGGAAGG 586 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 549 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAAGAAGGAAGG 608 Query 587 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACAAAATTCTTTA 646 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 609 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACACAATTCTTAA 668 Query 647 AGCCGACTCAAGAAGAAAATATATTTGAGtttttttGTAACATCGAGAATCATGATGAGA 706 ||| ||||||||||||| | |||| || ||||||||||||| ||| | | ||| | | Sbjct 669 AGCTGACTCAAGAAGAATG-AC-TTTGGGTGTTTTTGTAACATCAAGA-TGA-GAT-A-A 722 Query 707 TCAAATGCAATCGACCTTTTCAGATTTGTAATGGAGTATAGGTATTCTTCTGTGAACAAG 766 | | |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| Sbjct 723 T-A--TGCAATCGACCTTTTCAGTTTTGTAATGGAGGATAGGTATT-TTCTGTGAACAAG 778 Query 767 AAAGAGTGACTCTGTTTGTAACTTC 791 ||||||||||||||||||||||||| Sbjct 779 AAAGAGTGACTCTGTTTGTAACTTC 803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38479356602 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5