BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488924
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1598 0.0
> AT5G20190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6814093-6815379 FORWARD LENGTH=1081
Length=1081
Score = 1598 bits (865), Expect = 0.0
Identities = 1018/1089 (93%), Gaps = 22/1089 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCTACGAAGCGCGTCAACGCCAGTTCTCAATTCATTGGTTCATGTCTCGAGTCCA 60
||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1 ATGCTTCTACGAAGCGCTTCAACGCCACTTCTAAACTCATTGGTTCATGTCTCGAGTCCA 60
Query 61 AGGGAATCTCCAATCGAAGCTACTGAATCTGTTCATCAGATTCAACGGCACAAATCCTTA 120
|| || |||||||||||| | |||||||||||||||||||||||| |||| |||| ||
Sbjct 61 AGAGATTCTCCAATCGAAACCGTTGAATCTGTTCATCAGATTCAACGACACAGATCCATA 120
Query 121 AAACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTAAACTCTAGTGAC 180
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 ACACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTACACTCTAGCGAC 180
Query 181 GAATCTACAAGGTGGATGAAAAGGACGGCGTCAGAAAGCGATCTACGACATTTGACATCG 240
|| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GATTCTTCAAGGAGGATGAAAAGAACGGCGTCAGATAGCGATCTACGACATTTGACATCG 240
Query 241 CCGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGCTGGAGGATATGGAAGAA 300
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 241 ACGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGATGGAGGATGTGGATGAA 300
Query 301 GGAATTGGATTCGGTCTTATACGCACGTCGTCTTATGATGGTATAAGTTGGGCTTTGGAG 360
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGAATCGGATTCGGTCTTATACGCACTTCGTCTTATGATGGTATAAGTTGGGCTTTGGAT 360
Query 361 GAAGATACTGAGGTTACTGGCGGTGGTGGTGGTGGAATGTTTCACGGTGGAGGTAAAGGA 420
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GAAGATACTGAGGTTGCTGGCGGTGGTGGTGGTGGGATGTTTCACGGTGGAGGAAAAGGA 420
Query 421 AGGAGTGGTGGTAGATCTGA---T-G-G-T---GGTGACGATAATACTGATGTTCATTAT 471
|||||||||||||||||||| | | | | ||||||||||| |||||||||||||||
Sbjct 421 AGGAGTGGTGGTAGATCTGATGGTGGTGATGGAGGTGACGATAACACTGATGTTCATTAT 480
Query 472 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGCAATTACGCCAAATTC 531
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 481 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGTAATTATGCTAAATTC 540
Query 532 TTGAAGGAGGTTCGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGAAGAGCTATTCTG 591
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTGAAGGAGGTTAGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGGAGAGCTATTCTG 600
Query 592 GTGAGTCCTAATGATGGGAATGTTCTAGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 651
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GTGAGTCCTAATGATGGGAATGTTCTGGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 660
Query 652 AAGGATTCATCTCGTGCTGAGACTTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 711
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGATTCATCTCGTGCTGAGAATTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 720
Query 712 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTgaagaggaagaagaagag 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTGAAGAGGAAGAAGAAGAG 780
Query 772 gagaaggaagagagacatgaagaagaaCTTGAACATCAAACTTCTCGAATGAATTTCTTC 831
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 GAAAAGGAAGAGAGACATGAAGAAGAACTTGAGCATCAAACTTCTCGAATGAATTTCTTC 840
Query 832 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCCAGTC 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCC--T- 897
Query 892 TTTTATATAGATTTAGATATACGTGTCACGTCTATGATTTTAT---CTAACCCTTTTGTT 948
|| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 898 TT--ATA--GATTTAGATAAACGTGTCACGTCTATGATTTTATTATCTAACCCTTTTGTT 953
Query 949 TAATGTGAATTCTTTAGTTAAGCCTTTT-ATGGGTGTTTCTCTGCTCGGTGTTAAAATTT 1007
||||||||||||||||| |||||||||| |||||| ||||| | |||||||||| |||||
Sbjct 954 TAATGTGAATTCTTTAGCTAAGCCTTTTTATGGGTATTTCTTTACTCGGTGTTAGAATTT 1013
Query 1008 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAA-AGTTTTGCTT 1066
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1014 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAACAATTT-GCTT 1072
Query 1067 TTTGGTTGG 1075
|||||||||
Sbjct 1073 TTTGGTTGG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5