BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488984 Length=684 Score E Sequences producing significant alignments: (Bits) Value AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 761 0.0 AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 163 2e-39 > AT5G20790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7039911-7040654 REVERSE LENGTH=744 Length=744 Score = 761 bits (412), Expect = 0.0 Identities = 632/728 (87%), Gaps = 55/728 (8%) Strand=Plus/Plus Query 1 ACATTTCAAGAAAGAGATCGATGTCGACATTGGAATCTCCATTGGAGGCGTTGGCTTTTG 60 ||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 8 ACACTTCAATAAAGAGATCGATGTCGACTTTGGAATCTCCATTAGAGGCGTTGGCGTTTG 67 Query 61 AATACGCTAGCTTCGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 AATACGCTAGCTTAGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 127 Query 121 TGACCGCCGCCGTCAGCTTCTGGAGGATCAGAGTCACCACCATCAG-AGTTGGAGACGGC 179 |||| ||||| |||||||||||||||||||||||||| ||||| || ||| ||||||||| Sbjct 128 TGACTGCCGCTGTCAGCTTCTGGAGGATCAGAGTCACAACCAT-AGGAGTCGGAGACGGC 186 Query 180 CATGCATGTGTCTTGGTAGAGGAATTAACCGGTTCTAAATCGGAAAACGAATCCGGTCGT 239 ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct 187 CATGCATGTGTCTTGATAGAAGAATTAACCGGTTCTAAATCTGAAAACGAATCCGGTCGT 246 Query 240 CTCGAACCGAAATCAATAACCGGTCCGGTTAAAGAAACGG----A--A---A------CG 284 ||||||||||||||||||||||||||||| |||||||||| | | | || Sbjct 247 CTCGAACCGAAATCAATAACCGGTCCGGTCAAAGAAACGGTTGCACGAGTGAAGGAAACG 306 Query 285 GTTACAAAAACGGAGCCGTTAATGTATGATGACGGAGTGACCAAAGGG-AAGCTGACGAT 343 ||||| ||||||||||||||||| | |||||||||||||| |||||| ||||||||||| Sbjct 307 GTTACGAAAACGGAGCCGTTAATATGCGATGACGGAGTGAC-AAAGGGGAAGCTGACGAT 365 Query 344 GTACTATGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTATTGAGTCTGTTGACGGAGA 403 || ||| ||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 366 GTGCTACGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTGTT-A--------ACGGAGA 416 Query 404 GTTAACGGCCGTTAGCTGCGGAGGAGGTTTGGGTAATTGTGGCGGTGAGTGGTGGGAGAA 463 |||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||| Sbjct 417 TTTAACGGCAGTTAGCTACGGAGGAGGTTTGGGTAATTGTGGCGGGGATTGGTGGGAGAA 476 Query 464 ATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGTTACGTGGATTT 523 |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 477 ATGGGATGGAGTGGTGAGGATGAGAAATGGTGATGACAGTTGGTACCGTTACGTGGATTT 536 Query 524 AACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATGACACCCAGAG-CTAGTAACGGC 582 |||||||||||| |||||||| || |||||||||||||||| | | | ||||||||||| Sbjct 537 AACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATGACAACAAAACACTAGTAACGGC 596 Query 583 GGCAGGTGTCTAAATTAGAG---TTT--T-T-----AA--T--------CTTGAGAAACT 621 |||| ||||||||||||||| ||| | | || | |||||||| || Sbjct 597 GGCATGTGTCTAAATTAGAGAAGTTTCATATTTCGGAAAGTTTTTAAATCTTGAGAAGCT 656 Query 622 TTCTTGGTTTAAAGTGTATTTTTT--G--G-TTGATTAAGTTGTAATTTGTAAATAATTT 676 |||||||||| |||||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 657 TTCTTGGTTTGAAGTGTTTTTTTTTTGTTGGTTGATTAAGTTGTAATTTGTAAATAATTT 716 Query 677 TCACACAA 684 |||||||| Sbjct 717 TCACACAA 724 > AT3G43110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20790.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15091611-15092467 REVERSE LENGTH=857 Length=857 Score = 163 bits (88), Expect = 2e-39 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 453 TGGTGGGAGAAATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGT 512 |||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||| ||| Sbjct 591 TGGTGGGAGAGATGGGAGAGAGTGGTGAAGATGAGAAATGGAGATGAAGGTTGGTACCGT 650 Query 513 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATG 561 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 651 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33104302873 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5