BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488987 Length=560 Score E Sequences producing significant alignments: (Bits) Value AT5G20820.1 | Symbols: | SAUR-like auxin-responsive protein fa... 785 0.0 > AT5G20820.1 | Symbols: | SAUR-like auxin-responsive protein family | chr5:7046751-7047396 REVERSE LENGTH=646 Length=646 Score = 785 bits (425), Expect = 0.0 Identities = 527/574 (92%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 1 ctctctctctctcACCGGAAAACTTACTCGGACTTGCATCTCCGACGTCAAAATTCCT-C 59 |||||||||||||||||||||||| |||||||||| ||| |||||||||||| || || | Sbjct 30 CTCTCTCTCTCTCACCGGAAAACTCACTCGGACTTACATTTCCGACGTCAAACTT-CTCC 88 Query 60 AAACGGAATCGGAAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 119 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 AAACCGAATCGGTAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 148 Query 120 AGAAACTCAATTCATTCAACACCAAGCCTAACCAACCACAAGCTCAAACCAATCACGGCC 179 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| Sbjct 149 AGAAACTCAATTCATTCAACACCAAGCCTAACCAGCCACCAGCTCAAACCAATCACAGCC 208 Query 180 GATCCTCCGCCGTGAGTGCATTTCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 239 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 209 GATCCTCCGCCGTGAGTGCGTTCCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 268 Query 240 CACGGAGGCCGTACCACGTGAGCTCTGACGTTGTGAGCCACCCGCTCTTCCAGCAGCTAG 299 |||||||| | |||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 269 CACGGAGGACATACCACGTGAGCTCCGATGTCGTGAGCCACCCGCTCTTCCAGCAGCTAG 328 Query 300 CGGCGGTGGATGGTGGATGTGGCAGCGAGGACGGTTCCATCTCCGTGTCATGTGAAGTTG 359 ||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| Sbjct 329 CGGCGGTGGATGGTGGATGCGGCAGCGAGGACGGTTCCATCTCTGTGTCGTGCGAAGTTG 388 Query 360 TCTTGTTTGAGCATTTGCTTTGGATGCTGGAGAACGCGGACGCTGACGAGTCACGCCCTG 419 |||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| | Sbjct 389 TCTTGTTTGAGCATTTGCTTTGGATGTTGGAGAACGCCGACGCCGATGAGTCACGCCCCG 448 Query 420 AGTCGGTCCACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 479 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 AGTCGGTCTACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 508 Query 480 CAAAATATATACA--ATGA--T-T-A-ATGTTTGTATATTCTATACTTT-TGTA-T--AC 528 |||||||||| | || | | | | |||||||||||||||| ||||| | || | || Sbjct 509 CAAAATATATTTATGATTAAATGTTACATGTTTGTATATTCTACACTTTGTATACTTTAC 568 Query 529 --TTTACATAGTCTTTCGTGAAATAATCTATTTT 560 |||||||||| ||||||||||||||||||||| Sbjct 569 ACTTTACATAGTATTTCGTGAAATAATCTATTTT 602 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26875268645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5