BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488996
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20900.1 | Symbols: JAZ12, TIFY3B | jasmonate-zim-domain pro... 1465 0.0
> AT5G20900.1 | Symbols: JAZ12, TIFY3B | jasmonate-zim-domain protein
12 | chr5:7090704-7092539 FORWARD LENGTH=1081
Length=1081
Score = 1465 bits (793), Expect = 0.0
Identities = 996/1087 (92%), Gaps = 42/1087 (4%)
Strand=Plus/Plus
Query 1 AAAAATCAATATCAATCGCCACGTGTCAAGTTACAGGAGCTTCTGAGGAGGATAAATCTC 60
||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 4 AAAAATCAATATCTATCGCCAGGTGTCAAATTACAGGAGCTTCTGAGAAGGATAAATCTC 63
Query 61 GGAGGTTCCCGGTCTGAACGACGTGGAGACGAAGCGAAACAAAAGCATTC---GGCAAA- 116
|||||||||||||||||||||||| |||||||||||||||||||| | || || | |
Sbjct 64 GGAGGTTCCCGGTCTGAACGACGTAGAGACGAAGCGAAACAAAAGTACTCTAAGGGAGAG 123
Query 117 AAG-A-CAGA-T-CT-A-C--AA-----C---T-T-----TT--GAGAGACAAGTCATGA 152
||| | || | | || | | || | | | || |||||||||| |||||
Sbjct 124 AAGTATCAAAATTCTCATCGGAAAAAGACAGATCTACAAATTTTGAGAGACAAGCCATGA 183
Query 153 ATAAGGTGAAAGACGAGCCACGCGCTTCCGTAGAAGGTGGATGTGGTGTTGCCGACGGTG 212
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 CTAAGGTGAAAGATGAGCCACGCGCTTCCGTTGAAGGTGGATGTGGTGTTGCCGACGGTG 243
Query 213 ACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTGTTGAGAAATCGATTAACGAAGTTA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTGTTGAGAAATCGATTAACGAAGTTA 303
Query 273 GGTCCACGGAGATCCAAACTTCTGAGCCAACGGTTCTTCCAAGTCAACTTACTATTTTCT 332
||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 304 GGTCCACGGAGATTCAAACCGCTGAGCCAACGGTTCCTCCAAATCAACTTACTATTTTCT 363
Query 333 TTGGTGGGAGTGTTACTGTGTTTGATGGACTTCCAGCAGAAAAGGTACAAGATATCCTCC 392
||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
Sbjct 364 TTGGTGGAAGTGTTACTGTGTTTGATGGACTTCCATCAGAAAAGGTTCAAGAAATCCTTC 423
Query 393 GTATTGCTGCTAAAGCAATGGAGACTAAGAATTCTACAAGCATCAGTCCTGTC-CATTCG 451
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 424 GTATTGCTGCTAAAGCAATGGAGACAAAGAATTCTACAAGCATCAGTCCTGTCTCAT-CG 482
Query 452 CCAGCACTGAACAGAGCTCCTTCTTTCTCAAGCACATCTAATGTCGCTTCACCAGCTGCA 511
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 483 CCAGCACTGAACAGAGCTCCTTCTTTCTCAAGCACATCTAATGTGGCATCACCAGCTGCA 542
Query 512 CAGCCATTTCCTATTCAGCCGATTTCGTTTTGCAGATCCGCGGCTGATCTACCTATTGCA 571
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 543 CAGCCATTTCCTATTCAGCCAATCTCGTTTTGCAGATCCACGGCTGATCTACCTATTGCA 602
Query 572 AGGAGGCATTCGCTTCAACGATTCCTCGAGAAAAGACGGGACAGATTGGTCAACAAAAAC 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AGGAGGCATTCGCTTCAACGATTCCTCGAGAAAAGACGGGACAGATTGGTCAACAAAAAC 662
Query 632 CCTTACCCTACTTCTGACATCAAAAAGACAGATGTCTCAACAGGAAATGTTTCTATCAAG 691
|||||||||||||| ||| ||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 663 CCTTACCCTACTTCAGACTTCAAAAAGACAGATGTCCCAACAGGCAATGTCTCTATCAAG 722
Query 692 GAGGAATTTCCGACTGCTTAGCAGAAGATCAAACCTCAAGGCTACAATAAGCTTTTGAGT 751
||||||||||| ||||||||||||||||||||||||| | ||| ||||||| | ||
Sbjct 723 GAGGAATTTCCAACTGCTTAGCAGAAGATCAAACCTC----C-ACATTAAGCTTATAAGC 777
Query 752 AAACTAAGTAAAACGTTATGTCAATATGGT--T-AATATGATAATCTATCATGTACGCTG 808
||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 778 AAACTAAGTAAAACGTTTTGTCAATATAGTAATTAATATGATAATCTATCATGTACGCTG 837
Query 809 CTGTGTGTAATGTGTTGTATGATAGTGTCTGTATAGGTTTGCTAGACAAACCGAAGATTG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTGTGTGTAATGTGTTGTATGATAGTGTCTGTATAGGTTTGCTAGACAAACCGAAGATTG 897
Query 869 TTTCCTTGTCTGG-AGTGGTCAGATATGTTTGTCATTTTACAAGTCTACTGAAGAAACTA 927
||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 898 TTTCCATGTCTGGGAGTGGTCAGATATGTTTGCCATTTTACAATTCTACTGAAGAAACTA 957
Query 928 TTGTAGTTTTAGTACCAGTGTCCTAGAGTCTATCTAACTAATGACTCTTTGATGTTATGT 987
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGTAGTT--AGTAACACTGTCCTAGAGTCTATCTAACTAATGACTCTTTGATGTTATGT 1015
Query 988 TATTGAACTTGTTATCTCTTCAAGATACAATGTGTGTGTAAAGTAAAGAAGTCTGTGTTG 1047
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 TATTGAACTTGTCATCTCTTCAAGATACAAT-TGTGTGTAAAGTAAAGAAGTCTGTGTTG 1074
Query 1048 TTGTTAT 1054
|| ||||
Sbjct 1075 TTATTAT 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5