BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489000
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translat... 1821 0.0
> AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translation
initiation factor 2 beta subunit | chr5:7094718-7097116
REVERSE LENGTH=1196
Length=1196
Score = 1821 bits (986), Expect = 0.0
Identities = 1136/1203 (94%), Gaps = 32/1203 (3%)
Strand=Plus/Plus
Query 1 TATCTCAGATTAAAACAAGCCCTGCGCCGCTTA--CTCTCGCAGATTCCTCCCGAAGCAA 58
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 TATCTCAGATTAAAACAACCCCTGCGCCGCTTACTCTCTCTCAGATTCCTCCCGAAGCAA 60
Query 59 CCTTTGTTAACTCTCTACGCCAATCTT-AGCGCTTAGACATTCCTTTTTGCAATCATGGC 117
|| | ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 61 CC-TCGTTTACTCTCTACGCCAAT-TTCAGCGCTTAGACATCCCTTTTTGCAATCATGGC 118
Query 118 TGATGAAAACAATGAGATAAGGGAAGAGCAAGAACAGCTCGCACCCTTTGATCCATCCaa 177
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 TGATGAAATCAATGAGATAAGGGAAGAGCAAGAACAGCTCGCACCCTTTGATCCTTCCAA 178
Query 178 gaagaaaaagaagaagaagGTTGTCATTCAGGAACCTGTTGAGGACTTAGCAGAGTCGTC 237
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 179 GAAGAAAAAGAAGAAGAAGGTTGTGATTCAGGAACCTGTCGAGGACTTAGCAGAGTCTTC 238
Query 238 ACAGA-TAGAGAAAACTGATTCATTACCTGTTAATGATGGTCTTGAGAGTTCATTTACTG 296
||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 ACAGACT-GAGAAATCTGATTCATTGCCTGTTAATGATGGTCTTGAGAGTTCATTTACTG 297
Query 297 GAATGAAGAAAAAGAAGAAGAAGCCAGCTGAATCAAG-TGCATTGAACAACGAAAGTGTT 355
|||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 298 GAATGAAGAAAAAGAAGAAGAAGCCAACTGAATCAAGCT-TATTGAACAACGAAAGTGTT 356
Query 356 GATGCTGGTGAAGATTTGGATGAGCTTGCTAATGACGAGGAAGAGGGGGAAGAAGGAAAA 415
|||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 357 GATGCTGGGGAAGATTTGGATGAGATTGCTAATGACGAGCAAGAGGGGGAAGAAGGAATA 416
Query 416 GTTCTACAGCAACGTTACCCCTGGGAGGGCAGTGAGAGGGATTACATATATGACGAGCTT 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 GTTCTACAGCAACGTTACCCCTGGGAGGGAAGTGAGAGGGATTACATATATGACGAGCTT 476
Query 476 CTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGCGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGCGT 536
Query 536 CGTACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGGACAAAGAAGACTGTCTTTGTC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGTACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGGACAAAGAAGACTGTCTTTGTC 596
Query 596 AACTTCATGGACCTTTGCAAGACGATGCATCGTCAACCAGATCATGTTATGCAATACTTG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACTTCATGGACCTTTGCAAGACGATGCATCGTCAACCAGATCATGTTATGCAATACTTG 656
Query 656 CTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAAGGTTGGTTGTTAAGGGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAAGGTTGGTTGTTAAGGGA 716
Query 716 AGGTTTGCACCTAAGAATTTTGAAGGAATTTTGCGACGGTATATCACTGACTACGTCATT 775
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 717 AGGTTTGCACCTAAGAATTTTGAAGGAATTTTGCGGCGATATATCACTGACTACGTCATT 776
Query 776 TGCCTTGGTTGCAAGAGCCCAGACACAATTCTCTCGAAGGAGAACCGTCTCTTCTTTCTG 835
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 777 TGCCTTGGTTGCAAGAGCCCAGACACCATTCTCTCCAAGGAGAACCGTCTCTTCTTTCTG 836
Query 836 AGATGTGAAAAGTGTGGATCTCAACGATCTGTGGCTCCGATCAAAACAGGGTTTGTTGCT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGATGTGAAAAGTGTGGATCTCAACGATCTGTGGCTCCGATCAAAACAGGGTTTGTTGCT 896
Query 896 CGTGTTAGTCGCAGGAAGACTTGAGAAATTAGAAGGTGAAGTGAGCTTGTTATGGAGTC- 954
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 897 CGTGTTAGTCGCAGGAAGACTTGAGAAATTAGAAGGTGAAGTGACCTTGGTATGGAGTTT 956
Query 955 GGAGCTATGCTTCTCTTCTACTGCTTCTGTATGAGTTTATGAGTTGAA-A--TACTTGTC 1011
|||||||| | || ||||||||||||||||||||||||||||| | ||||||||
Sbjct 957 GGAGCTAT--T-CT-----ACTGCTTCTGTATGAGTTTATGAGTTGAAGAAATACTTGTC 1008
Query 1012 TTGtttttttt-ttGAAGTTGTTTGGGAATAT--T-ATGACTTGACTTTAAAAAATGGGA 1067
||||||||||| || |||||| ||||||| | ||||||||||||| |||| |||||
Sbjct 1009 TTGTTTTTTTTATT----TTGTTTTGGAATATGATTATGACTTGACTTTTAAAA-TGGGA 1063
Query 1068 TAGGATCAAAACCTTTTACTCTGTCAGGTTCATTTGGTCAACTTGAAGGTCGATTTAGTA 1127
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1064 TAGGATCAAAACCTTTTACTCTGTCAGGTTCATGTGGTCACCTTGAAGGTTGATTTAGTA 1123
Query 1128 AATCCATGGACTTCATTTTTGTGTCAAGTAATCATTCTTAGTTAAAAATTAATAGACTAA 1187
|||||||||||||| ||||||||| ||| | | |||||||||| ||||||||||||||||
Sbjct 1124 AATCCATGGACTTCTTTTTTGTGTTAAG-ATT-ATTCTTAGTTCAAAATTAATAGACTAA 1181
Query 1188 TGA 1190
|||
Sbjct 1182 TGA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5