BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489028 Length=1244 Score E Sequences producing significant alignments: (Bits) Value AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kin... 1801 0.0 > AT5G21170.2 | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase beta-2 subunit protein | chr5:7205667-7208496 FORWARD LENGTH=1271 Length=1271 Score = 1801 bits (975), Expect = 0.0 Identities = 1184/1277 (93%), Gaps = 46/1277 (4%) Strand=Plus/Plus Query 1 AtctctctcctctctttgtctctctcACTTCTGTGATTTGGGCTTTTTCTCAGATGGGAA 60 |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| Sbjct 1 ATCTCTCTCCTCTCTTTGTCTCTCTCGCTTCTGTGATTTGGGC-TTTT-TCAGATGGGAA 58 Query 61 ATGCGAACGGCAAAGAAGACGACGCTACCGCC----GCCG-CCAGC-GGTGTTACCTCAT 114 |||||||||||||||| || ||||| ||||| || | || | ||||||||| | Sbjct 59 ATGCGAACGGCAAAGACGAAGACGCCGCCGCCGGTAGCGGTGGTGCAGATGTTACCTCGT 118 Query 115 CTTCGGCGAGATCCAACGGCGGCGATCCTTCTGCACGCAGTCGTCATCGTCGTCCTTCTT 174 | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 119 CCTCGGCGAGATCTAATGGCGGCGATCCTTCTGCACGCAGTCGTCACCGTCGTCCTTCTT 178 Query 175 CAGATTCTATGAGCAGTTCTCCTCCCGGAAGTCCCGCTCGATCTCCATCTCCTTTCTTAT 234 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 179 CAGACTCTATGAGCAGTTCTCCTCCCGGAAGTCCTGCTCGATCTCCATCTCCTTTCTTAT 238 Query 235 TCGCTCCTCAGCCCACATTGTTATTCCACCTTACATCTTACAACATTTGCTCACCTATGC 294 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 239 TCGCTCCTCAGCCCACATTGTTATTCCACGTTACATCTTACAACATTTGCTCACCTATGC 298 Query 295 GTCACCTCTTCCATTGTTTAGGCATAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 354 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 299 GTCACCTCTTCCATTGTTTAGGCTTAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 358 Query 355 TGGTTCCTGTGGCTCCATTGCAGAGAGCTAACGCCCCTCCTTCACCTAATAACATCCAAT 414 ||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 359 TGGTTCCCGTGGCTCCATTGCAGAGAGCAAACGCCCCTCC-T--CCTAATAACATCCAAT 415 Query 415 GGAACCAATCACAGAGAGTTTTTGATAATCCACCAGAGCAAGGAATCCCTACTATCATTA 474 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 416 GGAACCAATCACAGAGAGTTTTTGATAATCCCCCAGAGCAAGGAATCCCTACCATCATTA 475 Query 475 CTTGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCCTGGGACAATTGGAGATCAA 534 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 476 CATGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCATGGGACAATTGGAGATCAA 535 Query 535 GGAAGAAGCTGCAGAAATC-GGGAAAAGACCACTCAATTCTCTTTGTCCTTCCATCTGGC 593 ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct 536 GGAAGAAGCTGCAGAAATCAGGG-AAAGACCACTCGATTCTCTTTGTCCTTCCATCTGGC 594 Query 594 ATATACCACTACAAGGTGATTGTCGACGGTGAATCCAAATACATTCCAGATTTACCATTT 653 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 595 ATATACCACTACAAGGTGATTGTGGACGGTGAATCCAAATACATCCCAGATTTACCCTTT 654 Query 654 GTATCAGACGAAATTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 713 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GTAGCAGACGAAGTTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 714 Query 714 AACCCAGAAAGCATAGTGGAGTTTGAAGCGCCACCGTCACCTGATCATAGCTACGGTCAA 773 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 715 AACCCAGAAAGCATAGTGGAGTTTGAGGCGCCACCATCACCTGATCATAGCTACGGTCAA 774 Query 774 ACCCTACCAGCCGCAGAAGATTACGCAAAAGAGCCACTTGCGGTGCCACCTCAGCTTCAT 833 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 775 ACCCTACCAGCCGCAGAAGATTACGCGAAAGAGCCACTGGCGGTGCCACCTCAGCTTCAT 834 Query 834 CTAACACTTCTTGGCAGC-ACGGAAGAAAGAGCCGTAGCCACAAAGCCTCAACATGTGGT 892 |||||||||||||||| | || ||||| | |||| ||||||||||||||||||||||||| Sbjct 835 CTAACACTTCTTGGCA-CTACTGAAGAGACAGCCATAGCCACAAAGCCTCAACATGTGGT 893 Query 893 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 953 Query 953 AACCCAGAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1012 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 AACCCACAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1013 Query 1013 ACCCTAAAAATTCAGTGCCACATTGTTCT-T-T-T--CAT--------ATCTC--AATTA 1057 ||||||||||||||||||||||||||||| | | | | | ||||| ||||| Sbjct 1014 ACCCTAAAAATTCAGTGCCACATTGTTCTCTCTCTTTCTTTCTTTTTCATCTCTCAATTA 1073 Query 1058 TGTGAAACC-T-TTACTTTGTTCATAGTGA---GTG----CCCAACATT-GAGTTTATTA 1107 ||||||| | | || ||||||||||||||| ||| ||||||||| |||||||||| Sbjct 1074 TGTGAAAACATGTT-CTTTGTTCATAGTGACTAGTGAGTGCCCAACATTTGAGTTTATTA 1132 Query 1108 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGCAACGATTG 1167 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1133 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGTAACGATTG 1192 Query 1168 TACTCTTATATATTTCCTGCAAAAACTGTGAAATACATTCTCTAATAATGGGCTATAACA 1227 | | || ||| |||| |||||||||||| |||||||||| |||||||||| |||||||| Sbjct 1193 TTGT-TT-TAT-TTTC-TGCAAAAACTGTAAAATACATTCGCTAATAATGG-CTATAACA 1247 Query 1228 AGCTTATCTGCTAGCAA 1244 ||||||||||||||||| Sbjct 1248 AGCTTATCTGCTAGCAA 1264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61144263810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5